Gene : Phvul.008G161800 P. vulgaris v2.1
Defline:  (1 of 3) K14191 - 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase [EC:2.1.1.183] (DIM1) Genomic Order:  1615
Name:  ? Phvul.008G161800 Secondary Identifier:  ? PAC:37158696
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G161800 0.5kb upstream 0.5kb upstream 2461 true Chr08: 44007679-44010139 Phaseolus vulgaris
Phvul.008G161800 0.5kb upstream 0.5kb upstream 500 false Chr08: 44009640-44010139 Phaseolus vulgaris
Phvul.008G161800 0.5kb downstream 0.5kb downstream 2461 true Chr08: 44007179-44009639 Phaseolus vulgaris
Phvul.008G161800 0.5kb downstream 0.5kb downstream 500 false Chr08: 44007179-44007678 Phaseolus vulgaris
Phvul.008G161800 1.0kb upstream 1.0kb upstream 2961 true Chr08: 44007679-44010639 Phaseolus vulgaris
Phvul.008G161800 1.0kb upstream 1.0kb upstream 1000 false Chr08: 44009640-44010639 Phaseolus vulgaris
Phvul.008G161800 1.0kb downstream 1.0kb downstream 2961 true Chr08: 44006679-44009639 Phaseolus vulgaris
Phvul.008G161800 1.0kb downstream 1.0kb downstream 1000 false Chr08: 44006679-44007678 Phaseolus vulgaris
Phvul.008G161800 2.0kb upstream 2.0kb upstream 3961 true Chr08: 44007679-44011639 Phaseolus vulgaris
Phvul.008G161800 2.0kb upstream 2.0kb upstream 2000 false Chr08: 44009640-44011639 Phaseolus vulgaris
Phvul.008G161800 2.0kb downstream 2.0kb downstream 3961 true Chr08: 44005679-44009639 Phaseolus vulgaris
Phvul.008G161800 2.0kb downstream 2.0kb downstream 2000 false Chr08: 44005679-44007678 Phaseolus vulgaris
Phvul.008G161800 5.0kb upstream 5.0kb upstream 6961 true Chr08: 44007679-44014639 Phaseolus vulgaris
Phvul.008G161800 5.0kb upstream 5.0kb upstream 5000 false Chr08: 44009640-44014639 Phaseolus vulgaris
Phvul.008G161800 5.0kb downstream 5.0kb downstream 6961 true Chr08: 44002679-44009639 Phaseolus vulgaris
Phvul.008G161800 5.0kb downstream 5.0kb downstream 5000 false Chr08: 44002679-44007678 Phaseolus vulgaris
Phvul.008G161800 10.0kb upstream 10.0kb upstream 11961 true Chr08: 44007679-44019639 Phaseolus vulgaris
Phvul.008G161800 10.0kb upstream 10.0kb upstream 10000 false Chr08: 44009640-44019639 Phaseolus vulgaris
Phvul.008G161800 10.0kb downstream 10.0kb downstream 11961 true Chr08: 43997679-44009639 Phaseolus vulgaris
Phvul.008G161800 10.0kb downstream 10.0kb downstream 10000 false Chr08: 43997679-44007678 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301781 5265 Fabidae View MSA
124060934 5270 Rosid View MSA
123741013 5271 Pentapetalae View MSA
122790361 5272 Eudicot View MSA
122042142 5273 Angiosperm View MSA
121344705 5274 Embryophyte View MSA
123426456 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.1702 0.0 38.0146    
cufflinks 16.2841 0.0 43.2388    
cufflinks 11.6243 0.0 31.7565   Low
cufflinks 18.4773 0.0 48.7235   High
cufflinks 14.9182 0.0 39.9987    
cufflinks 11.3349 0.0 30.9788   Low
cufflinks 12.2573 0.0 33.2035    
cufflinks 15.4747 0.0 41.1819    
cufflinks 11.312 0.0 30.8351   Low
cufflinks 13.7576 0.0 37.0146    
cufflinks 15.0496 0.0 40.22    

0 Strain