Gene : Phvul.008G161000 P. vulgaris v2.1
Defline:  (1 of 1) K13600 - chlorophyllide a oxygenase (CAO) Genomic Order:  1607
Name:  ? Phvul.008G161000 Secondary Identifier:  ? PAC:37158407
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5068 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G161000 0.5kb upstream 0.5kb upstream 5449 true Chr08: 43784241-43789689 Phaseolus vulgaris
Phvul.008G161000 0.5kb upstream 0.5kb upstream 500 false Chr08: 43789190-43789689 Phaseolus vulgaris
Phvul.008G161000 0.5kb downstream 0.5kb downstream 5449 true Chr08: 43783741-43789189 Phaseolus vulgaris
Phvul.008G161000 0.5kb downstream 0.5kb downstream 500 false Chr08: 43783741-43784240 Phaseolus vulgaris
Phvul.008G161000 1.0kb upstream 1.0kb upstream 5949 true Chr08: 43784241-43790189 Phaseolus vulgaris
Phvul.008G161000 1.0kb upstream 1.0kb upstream 1000 false Chr08: 43789190-43790189 Phaseolus vulgaris
Phvul.008G161000 1.0kb downstream 1.0kb downstream 5949 true Chr08: 43783241-43789189 Phaseolus vulgaris
Phvul.008G161000 1.0kb downstream 1.0kb downstream 1000 false Chr08: 43783241-43784240 Phaseolus vulgaris
Phvul.008G161000 2.0kb upstream 2.0kb upstream 6949 true Chr08: 43784241-43791189 Phaseolus vulgaris
Phvul.008G161000 2.0kb upstream 2.0kb upstream 2000 false Chr08: 43789190-43791189 Phaseolus vulgaris
Phvul.008G161000 2.0kb downstream 2.0kb downstream 6949 true Chr08: 43782241-43789189 Phaseolus vulgaris
Phvul.008G161000 2.0kb downstream 2.0kb downstream 2000 false Chr08: 43782241-43784240 Phaseolus vulgaris
Phvul.008G161000 5.0kb upstream 5.0kb upstream 9949 true Chr08: 43784241-43794189 Phaseolus vulgaris
Phvul.008G161000 5.0kb upstream 5.0kb upstream 5000 false Chr08: 43789190-43794189 Phaseolus vulgaris
Phvul.008G161000 5.0kb downstream 5.0kb downstream 9949 true Chr08: 43779241-43789189 Phaseolus vulgaris
Phvul.008G161000 5.0kb downstream 5.0kb downstream 5000 false Chr08: 43779241-43784240 Phaseolus vulgaris
Phvul.008G161000 10.0kb upstream 10.0kb upstream 14949 true Chr08: 43784241-43799189 Phaseolus vulgaris
Phvul.008G161000 10.0kb upstream 10.0kb upstream 10000 false Chr08: 43789190-43799189 Phaseolus vulgaris
Phvul.008G161000 10.0kb downstream 10.0kb downstream 14949 true Chr08: 43774241-43789189 Phaseolus vulgaris
Phvul.008G161000 10.0kb downstream 10.0kb downstream 10000 false Chr08: 43774241-43784240 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309423 5265 Fabidae View MSA
124067782 5270 Rosid View MSA
123744269 5271 Pentapetalae View MSA
122787506 5272 Eudicot View MSA
122048070 5273 Angiosperm View MSA
123429167 5275 Viridiplantae View MSA
121348979 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.20409 0.0 24.5138    
cufflinks 13.5455 0.0 35.3035    
cufflinks 117.085 0.0 345.053 High High
cufflinks 6.73361 0.0 18.4763    
cufflinks 14.107 0.0 36.8161    
cufflinks 45.6685 0.0 121.58 High High
cufflinks 0.938744 0.0 3.16385   Low
cufflinks 0.842875 0.0 2.8683   Low
cufflinks 0.880833 0.0 2.99628   Low
cufflinks 6.77532 0.0 18.5351    
cufflinks 10.4971 0.0 27.8185    

0 Strain