Gene : Phvul.008G141200 P. vulgaris v2.1
Defline:  (1 of 3) PTHR11877//PTHR11877:SF25 - HYDROXYMETHYLGLUTARYL-COA SYNTHASE // SUBFAMILY NOT NAMED Genomic Order:  1551
Name:  ? Phvul.008G141200 Secondary Identifier:  ? PAC:37157843
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G141200 0.5kb upstream 0.5kb upstream 1944 true Chr08: 39671472-39673415 Phaseolus vulgaris
Phvul.008G141200 0.5kb upstream 0.5kb upstream 500 false Chr08: 39671472-39671971 Phaseolus vulgaris
Phvul.008G141200 0.5kb downstream 0.5kb downstream 1944 true Chr08: 39671972-39673915 Phaseolus vulgaris
Phvul.008G141200 0.5kb downstream 0.5kb downstream 500 false Chr08: 39673416-39673915 Phaseolus vulgaris
Phvul.008G141200 1.0kb upstream 1.0kb upstream 2444 true Chr08: 39670972-39673415 Phaseolus vulgaris
Phvul.008G141200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 39670972-39671971 Phaseolus vulgaris
Phvul.008G141200 1.0kb downstream 1.0kb downstream 2444 true Chr08: 39671972-39674415 Phaseolus vulgaris
Phvul.008G141200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 39673416-39674415 Phaseolus vulgaris
Phvul.008G141200 2.0kb upstream 2.0kb upstream 3444 true Chr08: 39669972-39673415 Phaseolus vulgaris
Phvul.008G141200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 39669972-39671971 Phaseolus vulgaris
Phvul.008G141200 2.0kb downstream 2.0kb downstream 3444 true Chr08: 39671972-39675415 Phaseolus vulgaris
Phvul.008G141200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 39673416-39675415 Phaseolus vulgaris
Phvul.008G141200 5.0kb upstream 5.0kb upstream 6444 true Chr08: 39666972-39673415 Phaseolus vulgaris
Phvul.008G141200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 39666972-39671971 Phaseolus vulgaris
Phvul.008G141200 5.0kb downstream 5.0kb downstream 6444 true Chr08: 39671972-39678415 Phaseolus vulgaris
Phvul.008G141200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 39673416-39678415 Phaseolus vulgaris
Phvul.008G141200 10.0kb upstream 10.0kb upstream 11444 true Chr08: 39661972-39673415 Phaseolus vulgaris
Phvul.008G141200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 39661972-39671971 Phaseolus vulgaris
Phvul.008G141200 10.0kb downstream 10.0kb downstream 11444 true Chr08: 39671972-39683415 Phaseolus vulgaris
Phvul.008G141200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 39673416-39683415 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305000 5265 Fabidae View MSA
124068304 5270 Rosid View MSA
123739380 5271 Pentapetalae View MSA
122792095 5272 Eudicot View MSA
122045794 5273 Angiosperm View MSA
121348952 5274 Embryophyte View MSA
123428386 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0990969 0.0 0.429729 Low High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0205791 0.0 0.104197 Low  
cufflinks 0.0301033 0.0 0.146216 Low  
cufflinks 0.0137137 0.0 0.0733531 Low Low
cufflinks 0.0257361 0.0 0.127678 Low  

0 Strain