Gene : Phvul.008G142900 P. vulgaris v2.1
Defline:  (1 of 15) PF04640 - PLATZ transcription factor (PLATZ) Genomic Order:  1453
Name:  ? Phvul.008G142900 Secondary Identifier:  ? PAC:37160766
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G142900 0.5kb upstream 0.5kb upstream 2896 true Chr08: 30584578-30587473 Phaseolus vulgaris
Phvul.008G142900 0.5kb upstream 0.5kb upstream 500 false Chr08: 30586974-30587473 Phaseolus vulgaris
Phvul.008G142900 0.5kb downstream 0.5kb downstream 2896 true Chr08: 30584078-30586973 Phaseolus vulgaris
Phvul.008G142900 0.5kb downstream 0.5kb downstream 500 false Chr08: 30584078-30584577 Phaseolus vulgaris
Phvul.008G142900 1.0kb upstream 1.0kb upstream 3396 true Chr08: 30584578-30587973 Phaseolus vulgaris
Phvul.008G142900 1.0kb upstream 1.0kb upstream 1000 false Chr08: 30586974-30587973 Phaseolus vulgaris
Phvul.008G142900 1.0kb downstream 1.0kb downstream 3396 true Chr08: 30583578-30586973 Phaseolus vulgaris
Phvul.008G142900 1.0kb downstream 1.0kb downstream 1000 false Chr08: 30583578-30584577 Phaseolus vulgaris
Phvul.008G142900 2.0kb upstream 2.0kb upstream 4396 true Chr08: 30584578-30588973 Phaseolus vulgaris
Phvul.008G142900 2.0kb upstream 2.0kb upstream 2000 false Chr08: 30586974-30588973 Phaseolus vulgaris
Phvul.008G142900 2.0kb downstream 2.0kb downstream 4396 true Chr08: 30582578-30586973 Phaseolus vulgaris
Phvul.008G142900 2.0kb downstream 2.0kb downstream 2000 false Chr08: 30582578-30584577 Phaseolus vulgaris
Phvul.008G142900 5.0kb upstream 5.0kb upstream 7396 true Chr08: 30584578-30591973 Phaseolus vulgaris
Phvul.008G142900 5.0kb upstream 5.0kb upstream 5000 false Chr08: 30586974-30591973 Phaseolus vulgaris
Phvul.008G142900 5.0kb downstream 5.0kb downstream 7396 true Chr08: 30579578-30586973 Phaseolus vulgaris
Phvul.008G142900 5.0kb downstream 5.0kb downstream 5000 false Chr08: 30579578-30584577 Phaseolus vulgaris
Phvul.008G142900 10.0kb upstream 10.0kb upstream 12396 true Chr08: 30584578-30596973 Phaseolus vulgaris
Phvul.008G142900 10.0kb upstream 10.0kb upstream 10000 false Chr08: 30586974-30596973 Phaseolus vulgaris
Phvul.008G142900 10.0kb downstream 10.0kb downstream 12396 true Chr08: 30574578-30586973 Phaseolus vulgaris
Phvul.008G142900 10.0kb downstream 10.0kb downstream 10000 false Chr08: 30574578-30584577 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306547 5265 Fabidae View MSA
124069177 5270 Rosid View MSA
123750215 5271 Pentapetalae View MSA
122789413 5272 Eudicot View MSA
122043598 5273 Angiosperm View MSA
121349888 5274 Embryophyte View MSA
123428703 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.19116 0.0 4.08269    
cufflinks 0.941846 0.0 3.33053    
cufflinks 0.156481 0.0 0.641328 Low Low
cufflinks 0.500571 0.0 1.87287 Low  
cufflinks 0.73847 0.0 2.6667    
cufflinks 0.880851 0.0 3.13425    
cufflinks 0.271351 0.0 1.06349 Low  
cufflinks 0.165751 0.0 0.6755 Low Low
cufflinks 0.828383 0.0 2.96689    
cufflinks 1.26514 0.0 4.33206   High
cufflinks 0.982561 0.0 3.46132    

0 Strain