Gene : Phvul.008G143400 P. vulgaris v2.1
Defline:  (1 of 3) PTHR31636:SF11 - SCARECROW-LIKE PROTEIN 22-RELATED Genomic Order:  1459
Name:  ? Phvul.008G143400 Secondary Identifier:  ? PAC:37158881
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G143400 0.5kb upstream 0.5kb upstream 3520 true Chr08: 30796055-30799574 Phaseolus vulgaris
Phvul.008G143400 0.5kb upstream 0.5kb upstream 500 false Chr08: 30799075-30799574 Phaseolus vulgaris
Phvul.008G143400 0.5kb downstream 0.5kb downstream 3520 true Chr08: 30795555-30799074 Phaseolus vulgaris
Phvul.008G143400 0.5kb downstream 0.5kb downstream 500 false Chr08: 30795555-30796054 Phaseolus vulgaris
Phvul.008G143400 1.0kb upstream 1.0kb upstream 4020 true Chr08: 30796055-30800074 Phaseolus vulgaris
Phvul.008G143400 1.0kb upstream 1.0kb upstream 1000 false Chr08: 30799075-30800074 Phaseolus vulgaris
Phvul.008G143400 1.0kb downstream 1.0kb downstream 4020 true Chr08: 30795055-30799074 Phaseolus vulgaris
Phvul.008G143400 1.0kb downstream 1.0kb downstream 1000 false Chr08: 30795055-30796054 Phaseolus vulgaris
Phvul.008G143400 2.0kb upstream 2.0kb upstream 5020 true Chr08: 30796055-30801074 Phaseolus vulgaris
Phvul.008G143400 2.0kb upstream 2.0kb upstream 2000 false Chr08: 30799075-30801074 Phaseolus vulgaris
Phvul.008G143400 2.0kb downstream 2.0kb downstream 5020 true Chr08: 30794055-30799074 Phaseolus vulgaris
Phvul.008G143400 2.0kb downstream 2.0kb downstream 2000 false Chr08: 30794055-30796054 Phaseolus vulgaris
Phvul.008G143400 5.0kb upstream 5.0kb upstream 8020 true Chr08: 30796055-30804074 Phaseolus vulgaris
Phvul.008G143400 5.0kb upstream 5.0kb upstream 5000 false Chr08: 30799075-30804074 Phaseolus vulgaris
Phvul.008G143400 5.0kb downstream 5.0kb downstream 8020 true Chr08: 30791055-30799074 Phaseolus vulgaris
Phvul.008G143400 5.0kb downstream 5.0kb downstream 5000 false Chr08: 30791055-30796054 Phaseolus vulgaris
Phvul.008G143400 10.0kb upstream 10.0kb upstream 13020 true Chr08: 30796055-30809074 Phaseolus vulgaris
Phvul.008G143400 10.0kb upstream 10.0kb upstream 10000 false Chr08: 30799075-30809074 Phaseolus vulgaris
Phvul.008G143400 10.0kb downstream 10.0kb downstream 13020 true Chr08: 30786055-30799074 Phaseolus vulgaris
Phvul.008G143400 10.0kb downstream 10.0kb downstream 10000 false Chr08: 30786055-30796054 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311488 5265 Fabidae View MSA
124067297 5270 Rosid View MSA
123748991 5271 Pentapetalae View MSA
122793941 5272 Eudicot View MSA
122048418 5273 Angiosperm View MSA
121350524 5274 Embryophyte View MSA
123381771 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.10171 0.0 21.1992   Low
cufflinks 12.3571 0.0 39.5075    
cufflinks 13.5623 0.0 43.346    
cufflinks 9.45916 0.0 30.8054    
cufflinks 15.9309 0.0 50.9321    
cufflinks 12.1251 0.0 38.8022    
cufflinks 23.4618 0.0 76.1738   High
cufflinks 29.4825 0.0 98.6672 High High
cufflinks 25.9251 0.0 85.052   High
cufflinks 13.944 0.0 44.319    
cufflinks 14.7937 0.0 47.02    

0 Strain