Gene : Phvul.008G270600 P. vulgaris v2.1
Defline:  (1 of 1) 2.1.3.2 - Aspartate carbamoyltransferase / Carbamylaspartotranskinase Genomic Order:  2719
Name:  ? Phvul.008G270600 Secondary Identifier:  ? PAC:37160031
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY0-162 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5686 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7211 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G270600 0.5kb upstream 0.5kb upstream 3632 true Chr08: 61481457-61485088 Phaseolus vulgaris
Phvul.008G270600 0.5kb upstream 0.5kb upstream 500 false Chr08: 61481457-61481956 Phaseolus vulgaris
Phvul.008G270600 0.5kb downstream 0.5kb downstream 3632 true Chr08: 61481957-61485588 Phaseolus vulgaris
Phvul.008G270600 0.5kb downstream 0.5kb downstream 500 false Chr08: 61485089-61485588 Phaseolus vulgaris
Phvul.008G270600 1.0kb upstream 1.0kb upstream 4132 true Chr08: 61480957-61485088 Phaseolus vulgaris
Phvul.008G270600 1.0kb upstream 1.0kb upstream 1000 false Chr08: 61480957-61481956 Phaseolus vulgaris
Phvul.008G270600 1.0kb downstream 1.0kb downstream 4132 true Chr08: 61481957-61486088 Phaseolus vulgaris
Phvul.008G270600 1.0kb downstream 1.0kb downstream 1000 false Chr08: 61485089-61486088 Phaseolus vulgaris
Phvul.008G270600 2.0kb upstream 2.0kb upstream 5132 true Chr08: 61479957-61485088 Phaseolus vulgaris
Phvul.008G270600 2.0kb upstream 2.0kb upstream 2000 false Chr08: 61479957-61481956 Phaseolus vulgaris
Phvul.008G270600 2.0kb downstream 2.0kb downstream 5132 true Chr08: 61481957-61487088 Phaseolus vulgaris
Phvul.008G270600 2.0kb downstream 2.0kb downstream 2000 false Chr08: 61485089-61487088 Phaseolus vulgaris
Phvul.008G270600 5.0kb upstream 5.0kb upstream 8132 true Chr08: 61476957-61485088 Phaseolus vulgaris
Phvul.008G270600 5.0kb upstream 5.0kb upstream 5000 false Chr08: 61476957-61481956 Phaseolus vulgaris
Phvul.008G270600 5.0kb downstream 5.0kb downstream 8132 true Chr08: 61481957-61490088 Phaseolus vulgaris
Phvul.008G270600 5.0kb downstream 5.0kb downstream 5000 false Chr08: 61485089-61490088 Phaseolus vulgaris
Phvul.008G270600 10.0kb upstream 10.0kb upstream 13132 true Chr08: 61471957-61485088 Phaseolus vulgaris
Phvul.008G270600 10.0kb upstream 10.0kb upstream 10000 false Chr08: 61471957-61481956 Phaseolus vulgaris
Phvul.008G270600 10.0kb downstream 10.0kb downstream 13132 true Chr08: 61481957-61495088 Phaseolus vulgaris
Phvul.008G270600 10.0kb downstream 10.0kb downstream 10000 false Chr08: 61485089-61495088 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312207 5265 Fabidae View MSA
124063971 5270 Rosid View MSA
123737455 5271 Pentapetalae View MSA
122791226 5272 Eudicot View MSA
122047002 5273 Angiosperm View MSA
121345349 5274 Embryophyte View MSA
123427161 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.9355 0.0 41.1256   High
cufflinks 12.7963 0.0 44.2509   High
cufflinks 8.58947 0.0 31.1487    
cufflinks 11.1211 0.0 34.0042    
cufflinks 8.00613 0.0 30.0312    
cufflinks 10.1067 0.0 30.6645    
cufflinks 5.85662 0.0 23.0397   Low
cufflinks 9.06345 0.0 32.2635    
cufflinks 6.38949 0.0 24.9602   Low
cufflinks 7.21618 0.0 28.6613    
cufflinks 8.99057 0.0 33.0568    

0 Strain