Gene : Phvul.008G269700 P. vulgaris v2.1
Defline:  (1 of 36) PF05553 - Cotton fibre expressed protein (DUF761) Genomic Order:  2710
Name:  ? Phvul.008G269700 Secondary Identifier:  ? PAC:37159950
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G269700 0.5kb upstream 0.5kb upstream 1270 true Chr08: 61421238-61422507 Phaseolus vulgaris
Phvul.008G269700 0.5kb upstream 0.5kb upstream 500 false Chr08: 61421238-61421737 Phaseolus vulgaris
Phvul.008G269700 0.5kb downstream 0.5kb downstream 1270 true Chr08: 61421738-61423007 Phaseolus vulgaris
Phvul.008G269700 0.5kb downstream 0.5kb downstream 500 false Chr08: 61422508-61423007 Phaseolus vulgaris
Phvul.008G269700 1.0kb upstream 1.0kb upstream 1770 true Chr08: 61420738-61422507 Phaseolus vulgaris
Phvul.008G269700 1.0kb upstream 1.0kb upstream 1000 false Chr08: 61420738-61421737 Phaseolus vulgaris
Phvul.008G269700 1.0kb downstream 1.0kb downstream 1770 true Chr08: 61421738-61423507 Phaseolus vulgaris
Phvul.008G269700 1.0kb downstream 1.0kb downstream 1000 false Chr08: 61422508-61423507 Phaseolus vulgaris
Phvul.008G269700 2.0kb upstream 2.0kb upstream 2770 true Chr08: 61419738-61422507 Phaseolus vulgaris
Phvul.008G269700 2.0kb upstream 2.0kb upstream 2000 false Chr08: 61419738-61421737 Phaseolus vulgaris
Phvul.008G269700 2.0kb downstream 2.0kb downstream 2770 true Chr08: 61421738-61424507 Phaseolus vulgaris
Phvul.008G269700 2.0kb downstream 2.0kb downstream 2000 false Chr08: 61422508-61424507 Phaseolus vulgaris
Phvul.008G269700 5.0kb upstream 5.0kb upstream 5770 true Chr08: 61416738-61422507 Phaseolus vulgaris
Phvul.008G269700 5.0kb upstream 5.0kb upstream 5000 false Chr08: 61416738-61421737 Phaseolus vulgaris
Phvul.008G269700 5.0kb downstream 5.0kb downstream 5770 true Chr08: 61421738-61427507 Phaseolus vulgaris
Phvul.008G269700 5.0kb downstream 5.0kb downstream 5000 false Chr08: 61422508-61427507 Phaseolus vulgaris
Phvul.008G269700 10.0kb upstream 10.0kb upstream 10770 true Chr08: 61411738-61422507 Phaseolus vulgaris
Phvul.008G269700 10.0kb upstream 10.0kb upstream 10000 false Chr08: 61411738-61421737 Phaseolus vulgaris
Phvul.008G269700 10.0kb downstream 10.0kb downstream 10770 true Chr08: 61421738-61432507 Phaseolus vulgaris
Phvul.008G269700 10.0kb downstream 10.0kb downstream 10000 false Chr08: 61422508-61432507 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313884 5265 Fabidae View MSA
124070125 5270 Rosid View MSA
123742485 5271 Pentapetalae View MSA
122795207 5272 Eudicot View MSA
122049562 5273 Angiosperm View MSA
121311476 5274 Embryophyte View MSA
123348769 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.144148 0.0 0.637185 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0831199 0.0 0.388228 Low Low
cufflinks 1.16104 0.0 4.34399    
cufflinks 0.35104 0.0 1.44472 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.02684 0.0 3.85376    
cufflinks 1.04 0.0 3.89788    
cufflinks 3.29212 0.0 11.0527   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.363416 0.0 1.48953 Low  

0 Strain