Gene : Phvul.008G257500 P. vulgaris v2.1
Defline:  (1 of 2) PTHR33405:SF1 - PROTEIN FLC EXPRESSOR Genomic Order:  2590
Name:  ? Phvul.008G257500 Secondary Identifier:  ? PAC:37160147
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G257500 0.5kb upstream 0.5kb upstream 5055 true Chr08: 60458134-60463188 Phaseolus vulgaris
Phvul.008G257500 0.5kb upstream 0.5kb upstream 500 false Chr08: 60462689-60463188 Phaseolus vulgaris
Phvul.008G257500 0.5kb downstream 0.5kb downstream 5055 true Chr08: 60457634-60462688 Phaseolus vulgaris
Phvul.008G257500 0.5kb downstream 0.5kb downstream 500 false Chr08: 60457634-60458133 Phaseolus vulgaris
Phvul.008G257500 1.0kb upstream 1.0kb upstream 5555 true Chr08: 60458134-60463688 Phaseolus vulgaris
Phvul.008G257500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 60462689-60463688 Phaseolus vulgaris
Phvul.008G257500 1.0kb downstream 1.0kb downstream 5555 true Chr08: 60457134-60462688 Phaseolus vulgaris
Phvul.008G257500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 60457134-60458133 Phaseolus vulgaris
Phvul.008G257500 2.0kb upstream 2.0kb upstream 6555 true Chr08: 60458134-60464688 Phaseolus vulgaris
Phvul.008G257500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 60462689-60464688 Phaseolus vulgaris
Phvul.008G257500 2.0kb downstream 2.0kb downstream 6555 true Chr08: 60456134-60462688 Phaseolus vulgaris
Phvul.008G257500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 60456134-60458133 Phaseolus vulgaris
Phvul.008G257500 5.0kb upstream 5.0kb upstream 9555 true Chr08: 60458134-60467688 Phaseolus vulgaris
Phvul.008G257500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 60462689-60467688 Phaseolus vulgaris
Phvul.008G257500 5.0kb downstream 5.0kb downstream 9555 true Chr08: 60453134-60462688 Phaseolus vulgaris
Phvul.008G257500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 60453134-60458133 Phaseolus vulgaris
Phvul.008G257500 10.0kb upstream 10.0kb upstream 14555 true Chr08: 60458134-60472688 Phaseolus vulgaris
Phvul.008G257500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 60462689-60472688 Phaseolus vulgaris
Phvul.008G257500 10.0kb downstream 10.0kb downstream 14555 true Chr08: 60448134-60462688 Phaseolus vulgaris
Phvul.008G257500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 60448134-60458133 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026776 5273 Angiosperm View MSA
122299801 5265 Fabidae View MSA
124060836 5270 Rosid View MSA
123743028 5271 Pentapetalae View MSA
122794369 5272 Eudicot View MSA
121296551 5274 Embryophyte View MSA
123334697 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.25577 0.0 12.7504   Low
cufflinks 6.57439 0.0 18.6737    
cufflinks 7.99008 0.0 22.4911    
cufflinks 5.90054 0.0 16.8299    
cufflinks 7.83917 0.0 21.9163    
cufflinks 5.31337 0.0 15.4625    
cufflinks 4.91317 0.0 14.2523    
cufflinks 5.04438 0.0 14.7805    
cufflinks 5.49893 0.0 15.741    
cufflinks 10.1848 0.0 27.7931   High
cufflinks 7.08046 0.0 19.8492    

0 Strain