Gene : Phvul.008G258200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31165:SF6 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 Genomic Order:  2597
Name:  ? Phvul.008G258200 Secondary Identifier:  ? PAC:37159616
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G258200 0.5kb upstream 0.5kb upstream 1151 true Chr08: 60526637-60527787 Phaseolus vulgaris
Phvul.008G258200 0.5kb upstream 0.5kb upstream 500 false Chr08: 60527288-60527787 Phaseolus vulgaris
Phvul.008G258200 0.5kb downstream 0.5kb downstream 1151 true Chr08: 60526137-60527287 Phaseolus vulgaris
Phvul.008G258200 0.5kb downstream 0.5kb downstream 500 false Chr08: 60526137-60526636 Phaseolus vulgaris
Phvul.008G258200 1.0kb upstream 1.0kb upstream 1651 true Chr08: 60526637-60528287 Phaseolus vulgaris
Phvul.008G258200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 60527288-60528287 Phaseolus vulgaris
Phvul.008G258200 1.0kb downstream 1.0kb downstream 1651 true Chr08: 60525637-60527287 Phaseolus vulgaris
Phvul.008G258200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 60525637-60526636 Phaseolus vulgaris
Phvul.008G258200 2.0kb upstream 2.0kb upstream 2651 true Chr08: 60526637-60529287 Phaseolus vulgaris
Phvul.008G258200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 60527288-60529287 Phaseolus vulgaris
Phvul.008G258200 2.0kb downstream 2.0kb downstream 2651 true Chr08: 60524637-60527287 Phaseolus vulgaris
Phvul.008G258200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 60524637-60526636 Phaseolus vulgaris
Phvul.008G258200 5.0kb upstream 5.0kb upstream 5651 true Chr08: 60526637-60532287 Phaseolus vulgaris
Phvul.008G258200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 60527288-60532287 Phaseolus vulgaris
Phvul.008G258200 5.0kb downstream 5.0kb downstream 5651 true Chr08: 60521637-60527287 Phaseolus vulgaris
Phvul.008G258200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 60521637-60526636 Phaseolus vulgaris
Phvul.008G258200 10.0kb upstream 10.0kb upstream 10651 true Chr08: 60526637-60537287 Phaseolus vulgaris
Phvul.008G258200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 60527288-60537287 Phaseolus vulgaris
Phvul.008G258200 10.0kb downstream 10.0kb downstream 10651 true Chr08: 60516637-60527287 Phaseolus vulgaris
Phvul.008G258200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 60516637-60526636 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310216 5265 Fabidae View MSA
124067272 5270 Rosid View MSA
123741885 5271 Pentapetalae View MSA
122789357 5272 Eudicot View MSA
122049887 5273 Angiosperm View MSA
121351474 5274 Embryophyte View MSA
123382179 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 65.1299 0.0 168.361 High  
cufflinks 44.1166 0.0 114.949 High  
cufflinks 3.78637 0.0 12.6042   Low
cufflinks 13.7733 0.0 38.7999    
cufflinks 55.0297 0.0 142.361 High  
cufflinks 4.41343 0.0 14.3251   Low
cufflinks 26.4637 0.0 70.6519    
cufflinks 35.9115 0.0 94.6637 High  
cufflinks 21.9158 0.0 59.3725    
cufflinks 95.5485 0.0 248.712 High High
cufflinks 34.8065 0.0 91.3126 High  

0 Strain