Gene : Phvul.008G249300 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11766 - TYROSYL-TRNA SYNTHETASE Genomic Order:  2504
Name:  ? Phvul.008G249300 Secondary Identifier:  ? PAC:37160355
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRNA-CHARGING-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G249300 0.5kb upstream 0.5kb upstream 1937 true Chr08: 59836731-59838667 Phaseolus vulgaris
Phvul.008G249300 0.5kb upstream 0.5kb upstream 500 false Chr08: 59838168-59838667 Phaseolus vulgaris
Phvul.008G249300 0.5kb downstream 0.5kb downstream 1937 true Chr08: 59836231-59838167 Phaseolus vulgaris
Phvul.008G249300 0.5kb downstream 0.5kb downstream 500 false Chr08: 59836231-59836730 Phaseolus vulgaris
Phvul.008G249300 1.0kb upstream 1.0kb upstream 2437 true Chr08: 59836731-59839167 Phaseolus vulgaris
Phvul.008G249300 1.0kb upstream 1.0kb upstream 1000 false Chr08: 59838168-59839167 Phaseolus vulgaris
Phvul.008G249300 1.0kb downstream 1.0kb downstream 2437 true Chr08: 59835731-59838167 Phaseolus vulgaris
Phvul.008G249300 1.0kb downstream 1.0kb downstream 1000 false Chr08: 59835731-59836730 Phaseolus vulgaris
Phvul.008G249300 2.0kb upstream 2.0kb upstream 3437 true Chr08: 59836731-59840167 Phaseolus vulgaris
Phvul.008G249300 2.0kb upstream 2.0kb upstream 2000 false Chr08: 59838168-59840167 Phaseolus vulgaris
Phvul.008G249300 2.0kb downstream 2.0kb downstream 3437 true Chr08: 59834731-59838167 Phaseolus vulgaris
Phvul.008G249300 2.0kb downstream 2.0kb downstream 2000 false Chr08: 59834731-59836730 Phaseolus vulgaris
Phvul.008G249300 5.0kb upstream 5.0kb upstream 6437 true Chr08: 59836731-59843167 Phaseolus vulgaris
Phvul.008G249300 5.0kb upstream 5.0kb upstream 5000 false Chr08: 59838168-59843167 Phaseolus vulgaris
Phvul.008G249300 5.0kb downstream 5.0kb downstream 6437 true Chr08: 59831731-59838167 Phaseolus vulgaris
Phvul.008G249300 5.0kb downstream 5.0kb downstream 5000 false Chr08: 59831731-59836730 Phaseolus vulgaris
Phvul.008G249300 10.0kb upstream 10.0kb upstream 11437 true Chr08: 59836731-59848167 Phaseolus vulgaris
Phvul.008G249300 10.0kb upstream 10.0kb upstream 10000 false Chr08: 59838168-59848167 Phaseolus vulgaris
Phvul.008G249300 10.0kb downstream 10.0kb downstream 11437 true Chr08: 59826731-59838167 Phaseolus vulgaris
Phvul.008G249300 10.0kb downstream 10.0kb downstream 10000 false Chr08: 59826731-59836730 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311730 5265 Fabidae View MSA
124066531 5270 Rosid View MSA
123740976 5271 Pentapetalae View MSA
122788187 5272 Eudicot View MSA
122042111 5273 Angiosperm View MSA
121344516 5274 Embryophyte View MSA
123424944 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.03588 0.0 17.072    
cufflinks 7.71455 0.0 21.4535    
cufflinks 32.0784 0.0 82.9566   High
cufflinks 9.84381 0.0 26.8701    
cufflinks 6.54675 0.0 18.4974    
cufflinks 14.0283 0.0 37.1487   High
cufflinks 3.52544 0.0 10.5994   Low
cufflinks 6.03889 0.0 17.1436    
cufflinks 3.91266 0.0 11.6869   Low
cufflinks 6.73672 0.0 18.9607    
cufflinks 4.97518 0.0 14.422    

0 Strain