Gene : Phvul.008G254500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10288:SF174 - RNA-BINDING KH DOMAIN-CONTAINING PROTEIN Genomic Order:  2558
Name:  ? Phvul.008G254500 Secondary Identifier:  ? PAC:37159976
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G254500 0.5kb upstream 0.5kb upstream 6369 true Chr08: 60246913-60253281 Phaseolus vulgaris
Phvul.008G254500 0.5kb upstream 0.5kb upstream 500 false Chr08: 60246913-60247412 Phaseolus vulgaris
Phvul.008G254500 0.5kb downstream 0.5kb downstream 6369 true Chr08: 60247413-60253781 Phaseolus vulgaris
Phvul.008G254500 0.5kb downstream 0.5kb downstream 500 false Chr08: 60253282-60253781 Phaseolus vulgaris
Phvul.008G254500 1.0kb upstream 1.0kb upstream 6869 true Chr08: 60246413-60253281 Phaseolus vulgaris
Phvul.008G254500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 60246413-60247412 Phaseolus vulgaris
Phvul.008G254500 1.0kb downstream 1.0kb downstream 6869 true Chr08: 60247413-60254281 Phaseolus vulgaris
Phvul.008G254500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 60253282-60254281 Phaseolus vulgaris
Phvul.008G254500 2.0kb upstream 2.0kb upstream 7869 true Chr08: 60245413-60253281 Phaseolus vulgaris
Phvul.008G254500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 60245413-60247412 Phaseolus vulgaris
Phvul.008G254500 2.0kb downstream 2.0kb downstream 7869 true Chr08: 60247413-60255281 Phaseolus vulgaris
Phvul.008G254500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 60253282-60255281 Phaseolus vulgaris
Phvul.008G254500 5.0kb upstream 5.0kb upstream 10869 true Chr08: 60242413-60253281 Phaseolus vulgaris
Phvul.008G254500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 60242413-60247412 Phaseolus vulgaris
Phvul.008G254500 5.0kb downstream 5.0kb downstream 10869 true Chr08: 60247413-60258281 Phaseolus vulgaris
Phvul.008G254500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 60253282-60258281 Phaseolus vulgaris
Phvul.008G254500 10.0kb upstream 10.0kb upstream 15869 true Chr08: 60237413-60253281 Phaseolus vulgaris
Phvul.008G254500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 60237413-60247412 Phaseolus vulgaris
Phvul.008G254500 10.0kb downstream 10.0kb downstream 15869 true Chr08: 60247413-60263281 Phaseolus vulgaris
Phvul.008G254500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 60253282-60263281 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305657 5265 Fabidae View MSA
124071830 5270 Rosid View MSA
123744817 5271 Pentapetalae View MSA
122797103 5272 Eudicot View MSA
122049280 5273 Angiosperm View MSA
121348372 5274 Embryophyte View MSA
123428845 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.67678 0.0 27.0485    
cufflinks 11.8276 0.0 37.1867   High
cufflinks 6.49866 0.0 21.3199   Low
cufflinks 12.9962 0.0 37.8595   High
cufflinks 8.75905 0.0 26.5678    
cufflinks 7.86471 0.0 24.3023    
cufflinks 7.98341 0.0 25.5075    
cufflinks 9.46526 0.0 28.9174    
cufflinks 8.66558 0.0 28.0436    
cufflinks 11.8605 0.0 34.093   High
cufflinks 8.10683 0.0 25.3756    

0 Strain