Gene : Phvul.008G252600 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10555//PTHR10555:SF155 - SORTING NEXIN // SUBFAMILY NOT NAMED Genomic Order:  2539
Name:  ? Phvul.008G252600 Secondary Identifier:  ? PAC:37157845
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G252600 0.5kb upstream 0.5kb upstream 7713 true Chr08: 60108987-60116699 Phaseolus vulgaris
Phvul.008G252600 0.5kb upstream 0.5kb upstream 500 false Chr08: 60116200-60116699 Phaseolus vulgaris
Phvul.008G252600 0.5kb downstream 0.5kb downstream 7713 true Chr08: 60108487-60116199 Phaseolus vulgaris
Phvul.008G252600 0.5kb downstream 0.5kb downstream 500 false Chr08: 60108487-60108986 Phaseolus vulgaris
Phvul.008G252600 1.0kb upstream 1.0kb upstream 8213 true Chr08: 60108987-60117199 Phaseolus vulgaris
Phvul.008G252600 1.0kb upstream 1.0kb upstream 1000 false Chr08: 60116200-60117199 Phaseolus vulgaris
Phvul.008G252600 1.0kb downstream 1.0kb downstream 8213 true Chr08: 60107987-60116199 Phaseolus vulgaris
Phvul.008G252600 1.0kb downstream 1.0kb downstream 1000 false Chr08: 60107987-60108986 Phaseolus vulgaris
Phvul.008G252600 2.0kb upstream 2.0kb upstream 9213 true Chr08: 60108987-60118199 Phaseolus vulgaris
Phvul.008G252600 2.0kb upstream 2.0kb upstream 2000 false Chr08: 60116200-60118199 Phaseolus vulgaris
Phvul.008G252600 2.0kb downstream 2.0kb downstream 9213 true Chr08: 60106987-60116199 Phaseolus vulgaris
Phvul.008G252600 2.0kb downstream 2.0kb downstream 2000 false Chr08: 60106987-60108986 Phaseolus vulgaris
Phvul.008G252600 5.0kb upstream 5.0kb upstream 12213 true Chr08: 60108987-60121199 Phaseolus vulgaris
Phvul.008G252600 5.0kb upstream 5.0kb upstream 5000 false Chr08: 60116200-60121199 Phaseolus vulgaris
Phvul.008G252600 5.0kb downstream 5.0kb downstream 12213 true Chr08: 60103987-60116199 Phaseolus vulgaris
Phvul.008G252600 5.0kb downstream 5.0kb downstream 5000 false Chr08: 60103987-60108986 Phaseolus vulgaris
Phvul.008G252600 10.0kb upstream 10.0kb upstream 17213 true Chr08: 60108987-60126199 Phaseolus vulgaris
Phvul.008G252600 10.0kb upstream 10.0kb upstream 10000 false Chr08: 60116200-60126199 Phaseolus vulgaris
Phvul.008G252600 10.0kb downstream 10.0kb downstream 17213 true Chr08: 60098987-60116199 Phaseolus vulgaris
Phvul.008G252600 10.0kb downstream 10.0kb downstream 10000 false Chr08: 60098987-60108986 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041026 5273 Angiosperm View MSA
122306330 5265 Fabidae View MSA
124063344 5270 Rosid View MSA
123749355 5271 Pentapetalae View MSA
122789384 5272 Eudicot View MSA
121345182 5274 Embryophyte View MSA
123428162 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.1848 0.0 45.099   Low
cufflinks 22.2292 0.0 71.5214    
cufflinks 25.1271 0.0 82.1068    
cufflinks 23.8026 0.0 77.0614    
cufflinks 25.6256 0.0 84.1724    
cufflinks 24.3587 0.0 79.7635    
cufflinks 22.626 0.0 73.7224    
cufflinks 18.9461 0.0 60.9909    
cufflinks 21.3783 0.0 69.1866    
cufflinks 20.9579 0.0 67.6489    
cufflinks 29.5042 0.0 98.2654   High

0 Strain