Gene : Phvul.008G239700 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11999//PTHR11999:SF92 - GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE // SUBFAMILY NOT NAMED Genomic Order:  2409
Name:  ? Phvul.008G239700 Secondary Identifier:  ? PAC:37159038
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY0-1305 Phaseolus vulgaris pathologic  
Pvulgaris PWY-4321 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G239700 0.5kb upstream 0.5kb upstream 5472 true Chr08: 58829075-58834546 Phaseolus vulgaris
Phvul.008G239700 0.5kb upstream 0.5kb upstream 500 false Chr08: 58834047-58834546 Phaseolus vulgaris
Phvul.008G239700 0.5kb downstream 0.5kb downstream 5472 true Chr08: 58828575-58834046 Phaseolus vulgaris
Phvul.008G239700 0.5kb downstream 0.5kb downstream 500 false Chr08: 58828575-58829074 Phaseolus vulgaris
Phvul.008G239700 1.0kb upstream 1.0kb upstream 5972 true Chr08: 58829075-58835046 Phaseolus vulgaris
Phvul.008G239700 1.0kb upstream 1.0kb upstream 1000 false Chr08: 58834047-58835046 Phaseolus vulgaris
Phvul.008G239700 1.0kb downstream 1.0kb downstream 5972 true Chr08: 58828075-58834046 Phaseolus vulgaris
Phvul.008G239700 1.0kb downstream 1.0kb downstream 1000 false Chr08: 58828075-58829074 Phaseolus vulgaris
Phvul.008G239700 2.0kb upstream 2.0kb upstream 6972 true Chr08: 58829075-58836046 Phaseolus vulgaris
Phvul.008G239700 2.0kb upstream 2.0kb upstream 2000 false Chr08: 58834047-58836046 Phaseolus vulgaris
Phvul.008G239700 2.0kb downstream 2.0kb downstream 6972 true Chr08: 58827075-58834046 Phaseolus vulgaris
Phvul.008G239700 2.0kb downstream 2.0kb downstream 2000 false Chr08: 58827075-58829074 Phaseolus vulgaris
Phvul.008G239700 5.0kb upstream 5.0kb upstream 9972 true Chr08: 58829075-58839046 Phaseolus vulgaris
Phvul.008G239700 5.0kb upstream 5.0kb upstream 5000 false Chr08: 58834047-58839046 Phaseolus vulgaris
Phvul.008G239700 5.0kb downstream 5.0kb downstream 9972 true Chr08: 58824075-58834046 Phaseolus vulgaris
Phvul.008G239700 5.0kb downstream 5.0kb downstream 5000 false Chr08: 58824075-58829074 Phaseolus vulgaris
Phvul.008G239700 10.0kb upstream 10.0kb upstream 14972 true Chr08: 58829075-58844046 Phaseolus vulgaris
Phvul.008G239700 10.0kb upstream 10.0kb upstream 10000 false Chr08: 58834047-58844046 Phaseolus vulgaris
Phvul.008G239700 10.0kb downstream 10.0kb downstream 14972 true Chr08: 58819075-58834046 Phaseolus vulgaris
Phvul.008G239700 10.0kb downstream 10.0kb downstream 10000 false Chr08: 58819075-58829074 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309616 5265 Fabidae View MSA
124073926 5270 Rosid View MSA
123749296 5271 Pentapetalae View MSA
122788993 5272 Eudicot View MSA
122047192 5273 Angiosperm View MSA
121350824 5274 Embryophyte View MSA
123427084 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.283469 0.0 1.06876 Low  
cufflinks 0.0519235 0.0 0.224746 Low Low
cufflinks 0.145551 0.0 0.577681 Low  
cufflinks 4.03823 0.0 11.557   High
cufflinks 0.85887 0.0 2.92791    
cufflinks 1.49479 0.0 4.74585    
cufflinks 0.370058 0.0 1.3617 Low  
cufflinks 0.0571966 0.0 0.245182 Low Low
cufflinks 1.55948 0.0 4.92707    
cufflinks 0.147305 0.0 0.584825 Low  
cufflinks 2.5375 0.0 7.61542   High

0 Strain