Gene : Phvul.008G241500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR31480:SF2 - PHYTOENE SYNTHASE, CHLOROPLASTIC Genomic Order:  2427
Name:  ? Phvul.008G241500 Secondary Identifier:  ? PAC:37160904
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris CAROTENOID-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-6475 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G241500 0.5kb upstream 0.5kb upstream 5748 true Chr08: 59008958-59014705 Phaseolus vulgaris
Phvul.008G241500 0.5kb upstream 0.5kb upstream 500 false Chr08: 59008958-59009457 Phaseolus vulgaris
Phvul.008G241500 0.5kb downstream 0.5kb downstream 5748 true Chr08: 59009458-59015205 Phaseolus vulgaris
Phvul.008G241500 0.5kb downstream 0.5kb downstream 500 false Chr08: 59014706-59015205 Phaseolus vulgaris
Phvul.008G241500 1.0kb upstream 1.0kb upstream 6248 true Chr08: 59008458-59014705 Phaseolus vulgaris
Phvul.008G241500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 59008458-59009457 Phaseolus vulgaris
Phvul.008G241500 1.0kb downstream 1.0kb downstream 6248 true Chr08: 59009458-59015705 Phaseolus vulgaris
Phvul.008G241500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 59014706-59015705 Phaseolus vulgaris
Phvul.008G241500 2.0kb upstream 2.0kb upstream 7248 true Chr08: 59007458-59014705 Phaseolus vulgaris
Phvul.008G241500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 59007458-59009457 Phaseolus vulgaris
Phvul.008G241500 2.0kb downstream 2.0kb downstream 7248 true Chr08: 59009458-59016705 Phaseolus vulgaris
Phvul.008G241500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 59014706-59016705 Phaseolus vulgaris
Phvul.008G241500 5.0kb upstream 5.0kb upstream 10248 true Chr08: 59004458-59014705 Phaseolus vulgaris
Phvul.008G241500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 59004458-59009457 Phaseolus vulgaris
Phvul.008G241500 5.0kb downstream 5.0kb downstream 10248 true Chr08: 59009458-59019705 Phaseolus vulgaris
Phvul.008G241500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 59014706-59019705 Phaseolus vulgaris
Phvul.008G241500 10.0kb upstream 10.0kb upstream 15248 true Chr08: 58999458-59014705 Phaseolus vulgaris
Phvul.008G241500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 58999458-59009457 Phaseolus vulgaris
Phvul.008G241500 10.0kb downstream 10.0kb downstream 15248 true Chr08: 59009458-59024705 Phaseolus vulgaris
Phvul.008G241500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 59014706-59024705 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
122301582 5265 Fabidae View MSA
124069921 5270 Rosid View MSA
123743557 5271 Pentapetalae View MSA
122795955 5272 Eudicot View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.9467 0.0 59.3841    
cufflinks 31.5809 0.0 101.255    
cufflinks 53.8231 0.0 188.861 High High
cufflinks 17.0942 0.0 54.138    
cufflinks 25.6803 0.0 80.622    
cufflinks 29.8862 0.0 95.2351    
cufflinks 8.41523 0.0 25.5362    
cufflinks 6.03853 0.0 21.6244   Low
cufflinks 3.97168 0.0 13.4671   Low
cufflinks 11.432 0.0 37.0282    
cufflinks 29.8261 0.0 94.6505    

0 Strain