Gene : Phvul.008G225100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR31412:SF5 - ZINC METALLOPROTEASE EGY2, CHLOROPLASTIC-RELATED Genomic Order:  2290
Name:  ? Phvul.008G225100 Secondary Identifier:  ? PAC:37159412
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G225100 0.5kb upstream 0.5kb upstream 6882 true Chr08: 57490473-57497354 Phaseolus vulgaris
Phvul.008G225100 0.5kb upstream 0.5kb upstream 500 false Chr08: 57496855-57497354 Phaseolus vulgaris
Phvul.008G225100 0.5kb downstream 0.5kb downstream 6882 true Chr08: 57489973-57496854 Phaseolus vulgaris
Phvul.008G225100 0.5kb downstream 0.5kb downstream 500 false Chr08: 57489973-57490472 Phaseolus vulgaris
Phvul.008G225100 1.0kb upstream 1.0kb upstream 7382 true Chr08: 57490473-57497854 Phaseolus vulgaris
Phvul.008G225100 1.0kb upstream 1.0kb upstream 1000 false Chr08: 57496855-57497854 Phaseolus vulgaris
Phvul.008G225100 1.0kb downstream 1.0kb downstream 7382 true Chr08: 57489473-57496854 Phaseolus vulgaris
Phvul.008G225100 1.0kb downstream 1.0kb downstream 1000 false Chr08: 57489473-57490472 Phaseolus vulgaris
Phvul.008G225100 2.0kb upstream 2.0kb upstream 8382 true Chr08: 57490473-57498854 Phaseolus vulgaris
Phvul.008G225100 2.0kb upstream 2.0kb upstream 2000 false Chr08: 57496855-57498854 Phaseolus vulgaris
Phvul.008G225100 2.0kb downstream 2.0kb downstream 8382 true Chr08: 57488473-57496854 Phaseolus vulgaris
Phvul.008G225100 2.0kb downstream 2.0kb downstream 2000 false Chr08: 57488473-57490472 Phaseolus vulgaris
Phvul.008G225100 5.0kb upstream 5.0kb upstream 11382 true Chr08: 57490473-57501854 Phaseolus vulgaris
Phvul.008G225100 5.0kb upstream 5.0kb upstream 5000 false Chr08: 57496855-57501854 Phaseolus vulgaris
Phvul.008G225100 5.0kb downstream 5.0kb downstream 11382 true Chr08: 57485473-57496854 Phaseolus vulgaris
Phvul.008G225100 5.0kb downstream 5.0kb downstream 5000 false Chr08: 57485473-57490472 Phaseolus vulgaris
Phvul.008G225100 10.0kb upstream 10.0kb upstream 16382 true Chr08: 57490473-57506854 Phaseolus vulgaris
Phvul.008G225100 10.0kb upstream 10.0kb upstream 10000 false Chr08: 57496855-57506854 Phaseolus vulgaris
Phvul.008G225100 10.0kb downstream 10.0kb downstream 16382 true Chr08: 57480473-57496854 Phaseolus vulgaris
Phvul.008G225100 10.0kb downstream 10.0kb downstream 10000 false Chr08: 57480473-57490472 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301078 5265 Fabidae View MSA
124061333 5270 Rosid View MSA
123739814 5271 Pentapetalae View MSA
122788407 5272 Eudicot View MSA
122044367 5273 Angiosperm View MSA
121345535 5274 Embryophyte View MSA
123425233 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 35.7244 0.0 141.442 High  
cufflinks 36.4355 0.0 144.26 High  
cufflinks 139.623 0.0 687.554 High High
cufflinks 18.2078 0.0 86.3332    
cufflinks 20.6653 0.0 80.2718    
cufflinks 69.3774 0.0 302.704 High  
cufflinks 1.14973 0.0 7.02557   Low
cufflinks 1.73796 0.0 9.90115   Low
cufflinks 0.736862 0.0 3.17146   Low
cufflinks 27.9288 0.0 117.514    
cufflinks 13.8497 0.0 56.8687    

0 Strain