Gene : Phvul.008G224000 P. vulgaris v2.1
Defline:  (1 of 6) K05857 - phosphatidylinositol phospholipase C, delta (PLCD) Genomic Order:  2279
Name:  ? Phvul.008G224000 Secondary Identifier:  ? PAC:37159694
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris LIPASYN-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-6351 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6367 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7039 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G224000 0.5kb upstream 0.5kb upstream 5942 true Chr08: 57400966-57406907 Phaseolus vulgaris
Phvul.008G224000 0.5kb upstream 0.5kb upstream 500 false Chr08: 57406408-57406907 Phaseolus vulgaris
Phvul.008G224000 0.5kb downstream 0.5kb downstream 5942 true Chr08: 57400466-57406407 Phaseolus vulgaris
Phvul.008G224000 0.5kb downstream 0.5kb downstream 500 false Chr08: 57400466-57400965 Phaseolus vulgaris
Phvul.008G224000 1.0kb upstream 1.0kb upstream 6442 true Chr08: 57400966-57407407 Phaseolus vulgaris
Phvul.008G224000 1.0kb upstream 1.0kb upstream 1000 false Chr08: 57406408-57407407 Phaseolus vulgaris
Phvul.008G224000 1.0kb downstream 1.0kb downstream 6442 true Chr08: 57399966-57406407 Phaseolus vulgaris
Phvul.008G224000 1.0kb downstream 1.0kb downstream 1000 false Chr08: 57399966-57400965 Phaseolus vulgaris
Phvul.008G224000 2.0kb upstream 2.0kb upstream 7442 true Chr08: 57400966-57408407 Phaseolus vulgaris
Phvul.008G224000 2.0kb upstream 2.0kb upstream 2000 false Chr08: 57406408-57408407 Phaseolus vulgaris
Phvul.008G224000 2.0kb downstream 2.0kb downstream 7442 true Chr08: 57398966-57406407 Phaseolus vulgaris
Phvul.008G224000 2.0kb downstream 2.0kb downstream 2000 false Chr08: 57398966-57400965 Phaseolus vulgaris
Phvul.008G224000 5.0kb upstream 5.0kb upstream 10442 true Chr08: 57400966-57411407 Phaseolus vulgaris
Phvul.008G224000 5.0kb upstream 5.0kb upstream 5000 false Chr08: 57406408-57411407 Phaseolus vulgaris
Phvul.008G224000 5.0kb downstream 5.0kb downstream 10442 true Chr08: 57395966-57406407 Phaseolus vulgaris
Phvul.008G224000 5.0kb downstream 5.0kb downstream 5000 false Chr08: 57395966-57400965 Phaseolus vulgaris
Phvul.008G224000 10.0kb upstream 10.0kb upstream 15442 true Chr08: 57400966-57416407 Phaseolus vulgaris
Phvul.008G224000 10.0kb upstream 10.0kb upstream 10000 false Chr08: 57406408-57416407 Phaseolus vulgaris
Phvul.008G224000 10.0kb downstream 10.0kb downstream 15442 true Chr08: 57390966-57406407 Phaseolus vulgaris
Phvul.008G224000 10.0kb downstream 10.0kb downstream 10000 false Chr08: 57390966-57400965 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311245 5265 Fabidae View MSA
124061623 5270 Rosid View MSA
123747750 5271 Pentapetalae View MSA
122786994 5272 Eudicot View MSA
122046719 5273 Angiosperm View MSA
121351735 5274 Embryophyte View MSA
123428200 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.6961 0.0 58.8836    
cufflinks 33.6143 0.0 88.8111 High  
cufflinks 43.4607 0.0 117.349 High High
cufflinks 30.008 0.0 78.4299    
cufflinks 32.2803 0.0 84.6251    
cufflinks 37.3419 0.0 99.5608 High  
cufflinks 24.6319 0.0 64.1223    
cufflinks 13.53 0.0 35.0172   Low
cufflinks 24.2709 0.0 63.1115    
cufflinks 34.7756 0.0 91.9323    
cufflinks 39.7263 0.0 105.826 High  

0 Strain