Gene : Phvul.008G230200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR12822:SF5 - INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN Genomic Order:  2341
Name:  ? Phvul.008G230200 Secondary Identifier:  ? PAC:37159379
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G230200 0.5kb upstream 0.5kb upstream 4617 true Chr08: 58161912-58166528 Phaseolus vulgaris
Phvul.008G230200 0.5kb upstream 0.5kb upstream 500 false Chr08: 58161912-58162411 Phaseolus vulgaris
Phvul.008G230200 0.5kb downstream 0.5kb downstream 4617 true Chr08: 58162412-58167028 Phaseolus vulgaris
Phvul.008G230200 0.5kb downstream 0.5kb downstream 500 false Chr08: 58166529-58167028 Phaseolus vulgaris
Phvul.008G230200 1.0kb upstream 1.0kb upstream 5117 true Chr08: 58161412-58166528 Phaseolus vulgaris
Phvul.008G230200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 58161412-58162411 Phaseolus vulgaris
Phvul.008G230200 1.0kb downstream 1.0kb downstream 5117 true Chr08: 58162412-58167528 Phaseolus vulgaris
Phvul.008G230200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 58166529-58167528 Phaseolus vulgaris
Phvul.008G230200 2.0kb upstream 2.0kb upstream 6117 true Chr08: 58160412-58166528 Phaseolus vulgaris
Phvul.008G230200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 58160412-58162411 Phaseolus vulgaris
Phvul.008G230200 2.0kb downstream 2.0kb downstream 6117 true Chr08: 58162412-58168528 Phaseolus vulgaris
Phvul.008G230200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 58166529-58168528 Phaseolus vulgaris
Phvul.008G230200 5.0kb upstream 5.0kb upstream 9117 true Chr08: 58157412-58166528 Phaseolus vulgaris
Phvul.008G230200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 58157412-58162411 Phaseolus vulgaris
Phvul.008G230200 5.0kb downstream 5.0kb downstream 9117 true Chr08: 58162412-58171528 Phaseolus vulgaris
Phvul.008G230200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 58166529-58171528 Phaseolus vulgaris
Phvul.008G230200 10.0kb upstream 10.0kb upstream 14117 true Chr08: 58152412-58166528 Phaseolus vulgaris
Phvul.008G230200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 58152412-58162411 Phaseolus vulgaris
Phvul.008G230200 10.0kb downstream 10.0kb downstream 14117 true Chr08: 58162412-58176528 Phaseolus vulgaris
Phvul.008G230200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 58166529-58176528 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305313 5265 Fabidae View MSA
124061119 5270 Rosid View MSA
123736433 5271 Pentapetalae View MSA
122791105 5272 Eudicot View MSA
122048759 5273 Angiosperm View MSA
121311097 5274 Embryophyte View MSA
123427303 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.0543 0.0 32.5865    
cufflinks 11.3639 0.0 30.9782    
cufflinks 6.89819 0.0 19.6431   Low
cufflinks 12.4374 0.0 33.7477    
cufflinks 10.2084 0.0 28.2016    
cufflinks 10.9025 0.0 29.8193    
cufflinks 8.49904 0.0 23.8031   Low
cufflinks 11.7353 0.0 31.8543    
cufflinks 11.6602 0.0 31.8345    
cufflinks 10.9556 0.0 29.9501    
cufflinks 10.9984 0.0 30.2053    

0 Strain