Gene : Phvul.008G233100 P. vulgaris v2.1
Defline:  (1 of 2) K10838 - xeroderma pigmentosum group C-complementing protein (XPC) Genomic Order:  1946
Name:  ? Phvul.008G233100 Secondary Identifier:  ? PAC:37160521
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G233100 0.5kb upstream 0.5kb upstream 8445 true Chr08: 53405499-53413943 Phaseolus vulgaris
Phvul.008G233100 0.5kb upstream 0.5kb upstream 500 false Chr08: 53405499-53405998 Phaseolus vulgaris
Phvul.008G233100 0.5kb downstream 0.5kb downstream 8445 true Chr08: 53405999-53414443 Phaseolus vulgaris
Phvul.008G233100 0.5kb downstream 0.5kb downstream 500 false Chr08: 53413944-53414443 Phaseolus vulgaris
Phvul.008G233100 1.0kb upstream 1.0kb upstream 8945 true Chr08: 53404999-53413943 Phaseolus vulgaris
Phvul.008G233100 1.0kb upstream 1.0kb upstream 1000 false Chr08: 53404999-53405998 Phaseolus vulgaris
Phvul.008G233100 1.0kb downstream 1.0kb downstream 8945 true Chr08: 53405999-53414943 Phaseolus vulgaris
Phvul.008G233100 1.0kb downstream 1.0kb downstream 1000 false Chr08: 53413944-53414943 Phaseolus vulgaris
Phvul.008G233100 2.0kb upstream 2.0kb upstream 9945 true Chr08: 53403999-53413943 Phaseolus vulgaris
Phvul.008G233100 2.0kb upstream 2.0kb upstream 2000 false Chr08: 53403999-53405998 Phaseolus vulgaris
Phvul.008G233100 2.0kb downstream 2.0kb downstream 9945 true Chr08: 53405999-53415943 Phaseolus vulgaris
Phvul.008G233100 2.0kb downstream 2.0kb downstream 2000 false Chr08: 53413944-53415943 Phaseolus vulgaris
Phvul.008G233100 5.0kb upstream 5.0kb upstream 12945 true Chr08: 53400999-53413943 Phaseolus vulgaris
Phvul.008G233100 5.0kb upstream 5.0kb upstream 5000 false Chr08: 53400999-53405998 Phaseolus vulgaris
Phvul.008G233100 5.0kb downstream 5.0kb downstream 12945 true Chr08: 53405999-53418943 Phaseolus vulgaris
Phvul.008G233100 5.0kb downstream 5.0kb downstream 5000 false Chr08: 53413944-53418943 Phaseolus vulgaris
Phvul.008G233100 10.0kb upstream 10.0kb upstream 17945 true Chr08: 53395999-53413943 Phaseolus vulgaris
Phvul.008G233100 10.0kb upstream 10.0kb upstream 10000 false Chr08: 53395999-53405998 Phaseolus vulgaris
Phvul.008G233100 10.0kb downstream 10.0kb downstream 17945 true Chr08: 53405999-53423943 Phaseolus vulgaris
Phvul.008G233100 10.0kb downstream 10.0kb downstream 10000 false Chr08: 53413944-53423943 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303800 5265 Fabidae View MSA
124051067 5270 Rosid View MSA
123738290 5271 Pentapetalae View MSA
122788160 5272 Eudicot View MSA
122049699 5273 Angiosperm View MSA
121347837 5274 Embryophyte View MSA
123425699 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.75263 0.0 2.50057    
cufflinks 1.27543 0.0 3.98949    
cufflinks 1.34657 0.0 4.17659    
cufflinks 0.504426 0.0 1.76725 Low Low
cufflinks 0.890463 0.0 2.926    
cufflinks 3.48977 0.0 9.77656   High
cufflinks 1.57425 0.0 4.80749    
cufflinks 1.84997 0.0 5.52048    
cufflinks 0.945378 0.0 3.0624    
cufflinks 1.51993 0.0 4.66493    
cufflinks 1.09229 0.0 3.49476    

0 Strain