Gene : Phvul.008G233000 P. vulgaris v2.1
Defline:  (1 of 2) K12870 - pre-mRNA-splicing factor ISY1 (ISY1) Genomic Order:  1947
Name:  ? Phvul.008G233000 Secondary Identifier:  ? PAC:37160641
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G233000 0.5kb upstream 0.5kb upstream 3617 true Chr08: 53437502-53441118 Phaseolus vulgaris
Phvul.008G233000 0.5kb upstream 0.5kb upstream 500 false Chr08: 53440619-53441118 Phaseolus vulgaris
Phvul.008G233000 0.5kb downstream 0.5kb downstream 3617 true Chr08: 53437002-53440618 Phaseolus vulgaris
Phvul.008G233000 0.5kb downstream 0.5kb downstream 500 false Chr08: 53437002-53437501 Phaseolus vulgaris
Phvul.008G233000 1.0kb upstream 1.0kb upstream 4117 true Chr08: 53437502-53441618 Phaseolus vulgaris
Phvul.008G233000 1.0kb upstream 1.0kb upstream 1000 false Chr08: 53440619-53441618 Phaseolus vulgaris
Phvul.008G233000 1.0kb downstream 1.0kb downstream 4117 true Chr08: 53436502-53440618 Phaseolus vulgaris
Phvul.008G233000 1.0kb downstream 1.0kb downstream 1000 false Chr08: 53436502-53437501 Phaseolus vulgaris
Phvul.008G233000 2.0kb upstream 2.0kb upstream 5117 true Chr08: 53437502-53442618 Phaseolus vulgaris
Phvul.008G233000 2.0kb upstream 2.0kb upstream 2000 false Chr08: 53440619-53442618 Phaseolus vulgaris
Phvul.008G233000 2.0kb downstream 2.0kb downstream 5117 true Chr08: 53435502-53440618 Phaseolus vulgaris
Phvul.008G233000 2.0kb downstream 2.0kb downstream 2000 false Chr08: 53435502-53437501 Phaseolus vulgaris
Phvul.008G233000 5.0kb upstream 5.0kb upstream 8117 true Chr08: 53437502-53445618 Phaseolus vulgaris
Phvul.008G233000 5.0kb upstream 5.0kb upstream 5000 false Chr08: 53440619-53445618 Phaseolus vulgaris
Phvul.008G233000 5.0kb downstream 5.0kb downstream 8117 true Chr08: 53432502-53440618 Phaseolus vulgaris
Phvul.008G233000 5.0kb downstream 5.0kb downstream 5000 false Chr08: 53432502-53437501 Phaseolus vulgaris
Phvul.008G233000 10.0kb upstream 10.0kb upstream 13117 true Chr08: 53437502-53450618 Phaseolus vulgaris
Phvul.008G233000 10.0kb upstream 10.0kb upstream 10000 false Chr08: 53440619-53450618 Phaseolus vulgaris
Phvul.008G233000 10.0kb downstream 10.0kb downstream 13117 true Chr08: 53427502-53440618 Phaseolus vulgaris
Phvul.008G233000 10.0kb downstream 10.0kb downstream 10000 false Chr08: 53427502-53437501 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303905 5265 Fabidae View MSA
124067488 5270 Rosid View MSA
123737510 5271 Pentapetalae View MSA
122786189 5272 Eudicot View MSA
122043978 5273 Angiosperm View MSA
121345749 5274 Embryophyte View MSA
123424977 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.79344 0.0 10.5559   Low
cufflinks 9.41651 0.0 24.5808    
cufflinks 9.86143 0.0 25.7622    
cufflinks 6.70149 0.0 17.9296    
cufflinks 8.79554 0.0 22.9937    
cufflinks 10.2845 0.0 26.7455   High
cufflinks 5.83579 0.0 15.5737    
cufflinks 9.87856 0.0 25.7045    
cufflinks 5.03762 0.0 13.6448   Low
cufflinks 6.82632 0.0 18.1374    
cufflinks 8.28656 0.0 21.6847    

0 Strain