Gene : Phvul.008G212400 P. vulgaris v2.1
Defline:  (1 of 197) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  2163
Name:  ? Phvul.008G212400 Secondary Identifier:  ? PAC:37157838
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G212400 0.5kb upstream 0.5kb upstream 4088 true Chr08: 56058456-56062543 Phaseolus vulgaris
Phvul.008G212400 0.5kb upstream 0.5kb upstream 500 false Chr08: 56058456-56058955 Phaseolus vulgaris
Phvul.008G212400 0.5kb downstream 0.5kb downstream 4088 true Chr08: 56058956-56063043 Phaseolus vulgaris
Phvul.008G212400 0.5kb downstream 0.5kb downstream 500 false Chr08: 56062544-56063043 Phaseolus vulgaris
Phvul.008G212400 1.0kb upstream 1.0kb upstream 4588 true Chr08: 56057956-56062543 Phaseolus vulgaris
Phvul.008G212400 1.0kb upstream 1.0kb upstream 1000 false Chr08: 56057956-56058955 Phaseolus vulgaris
Phvul.008G212400 1.0kb downstream 1.0kb downstream 4588 true Chr08: 56058956-56063543 Phaseolus vulgaris
Phvul.008G212400 1.0kb downstream 1.0kb downstream 1000 false Chr08: 56062544-56063543 Phaseolus vulgaris
Phvul.008G212400 2.0kb upstream 2.0kb upstream 5588 true Chr08: 56056956-56062543 Phaseolus vulgaris
Phvul.008G212400 2.0kb upstream 2.0kb upstream 2000 false Chr08: 56056956-56058955 Phaseolus vulgaris
Phvul.008G212400 2.0kb downstream 2.0kb downstream 5588 true Chr08: 56058956-56064543 Phaseolus vulgaris
Phvul.008G212400 2.0kb downstream 2.0kb downstream 2000 false Chr08: 56062544-56064543 Phaseolus vulgaris
Phvul.008G212400 5.0kb upstream 5.0kb upstream 8588 true Chr08: 56053956-56062543 Phaseolus vulgaris
Phvul.008G212400 5.0kb upstream 5.0kb upstream 5000 false Chr08: 56053956-56058955 Phaseolus vulgaris
Phvul.008G212400 5.0kb downstream 5.0kb downstream 8588 true Chr08: 56058956-56067543 Phaseolus vulgaris
Phvul.008G212400 5.0kb downstream 5.0kb downstream 5000 false Chr08: 56062544-56067543 Phaseolus vulgaris
Phvul.008G212400 10.0kb upstream 10.0kb upstream 13588 true Chr08: 56048956-56062543 Phaseolus vulgaris
Phvul.008G212400 10.0kb upstream 10.0kb upstream 10000 false Chr08: 56048956-56058955 Phaseolus vulgaris
Phvul.008G212400 10.0kb downstream 10.0kb downstream 13588 true Chr08: 56058956-56072543 Phaseolus vulgaris
Phvul.008G212400 10.0kb downstream 10.0kb downstream 10000 false Chr08: 56062544-56072543 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305180 5265 Fabidae View MSA
124067728 5270 Rosid View MSA
123742188 5271 Pentapetalae View MSA
122792936 5272 Eudicot View MSA
122045505 5273 Angiosperm View MSA
121310455 5274 Embryophyte View MSA
123347933 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.9021 0.0 43.7081    
cufflinks 23.5275 0.0 61.3083    
cufflinks 10.7393 0.0 27.9244   Low
cufflinks 29.3224 0.0 76.7965   High
cufflinks 17.9208 0.0 46.3494    
cufflinks 17.3723 0.0 44.9359    
cufflinks 15.5132 0.0 40.1004    
cufflinks 18.048 0.0 46.7232    
cufflinks 20.5753 0.0 53.3769    
cufflinks 25.1944 0.0 65.8063   High
cufflinks 19.9979 0.0 51.8372    

0 Strain