Gene : Phvul.008G212500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR27001:SF183 - PROTEIN LYK5 Genomic Order:  2164
Name:  ? Phvul.008G212500 Secondary Identifier:  ? PAC:37159081
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G212500 0.5kb upstream 0.5kb upstream 2982 true Chr08: 56062800-56065781 Phaseolus vulgaris
Phvul.008G212500 0.5kb upstream 0.5kb upstream 500 false Chr08: 56065282-56065781 Phaseolus vulgaris
Phvul.008G212500 0.5kb downstream 0.5kb downstream 2982 true Chr08: 56062300-56065281 Phaseolus vulgaris
Phvul.008G212500 0.5kb downstream 0.5kb downstream 500 false Chr08: 56062300-56062799 Phaseolus vulgaris
Phvul.008G212500 1.0kb upstream 1.0kb upstream 3482 true Chr08: 56062800-56066281 Phaseolus vulgaris
Phvul.008G212500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 56065282-56066281 Phaseolus vulgaris
Phvul.008G212500 1.0kb downstream 1.0kb downstream 3482 true Chr08: 56061800-56065281 Phaseolus vulgaris
Phvul.008G212500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 56061800-56062799 Phaseolus vulgaris
Phvul.008G212500 2.0kb upstream 2.0kb upstream 4482 true Chr08: 56062800-56067281 Phaseolus vulgaris
Phvul.008G212500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 56065282-56067281 Phaseolus vulgaris
Phvul.008G212500 2.0kb downstream 2.0kb downstream 4482 true Chr08: 56060800-56065281 Phaseolus vulgaris
Phvul.008G212500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 56060800-56062799 Phaseolus vulgaris
Phvul.008G212500 5.0kb upstream 5.0kb upstream 7482 true Chr08: 56062800-56070281 Phaseolus vulgaris
Phvul.008G212500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 56065282-56070281 Phaseolus vulgaris
Phvul.008G212500 5.0kb downstream 5.0kb downstream 7482 true Chr08: 56057800-56065281 Phaseolus vulgaris
Phvul.008G212500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 56057800-56062799 Phaseolus vulgaris
Phvul.008G212500 10.0kb upstream 10.0kb upstream 12482 true Chr08: 56062800-56075281 Phaseolus vulgaris
Phvul.008G212500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 56065282-56075281 Phaseolus vulgaris
Phvul.008G212500 10.0kb downstream 10.0kb downstream 12482 true Chr08: 56052800-56065281 Phaseolus vulgaris
Phvul.008G212500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 56052800-56062799 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302500 5265 Fabidae View MSA
124073020 5270 Rosid View MSA
123753390 5271 Pentapetalae View MSA
122790580 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.8525 0.0 53.9912    
cufflinks 13.8162 0.0 35.8028    
cufflinks 2.52007 0.0 7.48642   Low
cufflinks 14.3477 0.0 37.145    
cufflinks 9.65071 0.0 25.3633    
cufflinks 5.72584 0.0 15.6607    
cufflinks 16.8518 0.0 43.5588    
cufflinks 8.85545 0.0 23.3804    
cufflinks 11.5987 0.0 30.1819    
cufflinks 41.589 0.0 111.369 High High
cufflinks 10.2031 0.0 26.7199    

0 Strain