Gene : Phvul.008G211500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR32098:SF5 - LYCOPENE BETA/EPSILON CYCLASE PROTEIN Genomic Order:  2154
Name:  ? Phvul.008G211500 Secondary Identifier:  ? PAC:37157720
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris CAROTENOID-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-5943 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5947 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G211500 0.5kb upstream 0.5kb upstream 8069 true Chr08: 55988260-55996328 Phaseolus vulgaris
Phvul.008G211500 0.5kb upstream 0.5kb upstream 500 false Chr08: 55995829-55996328 Phaseolus vulgaris
Phvul.008G211500 0.5kb downstream 0.5kb downstream 8069 true Chr08: 55987760-55995828 Phaseolus vulgaris
Phvul.008G211500 0.5kb downstream 0.5kb downstream 500 false Chr08: 55987760-55988259 Phaseolus vulgaris
Phvul.008G211500 1.0kb upstream 1.0kb upstream 8569 true Chr08: 55988260-55996828 Phaseolus vulgaris
Phvul.008G211500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 55995829-55996828 Phaseolus vulgaris
Phvul.008G211500 1.0kb downstream 1.0kb downstream 8569 true Chr08: 55987260-55995828 Phaseolus vulgaris
Phvul.008G211500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 55987260-55988259 Phaseolus vulgaris
Phvul.008G211500 2.0kb upstream 2.0kb upstream 9569 true Chr08: 55988260-55997828 Phaseolus vulgaris
Phvul.008G211500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 55995829-55997828 Phaseolus vulgaris
Phvul.008G211500 2.0kb downstream 2.0kb downstream 9569 true Chr08: 55986260-55995828 Phaseolus vulgaris
Phvul.008G211500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 55986260-55988259 Phaseolus vulgaris
Phvul.008G211500 5.0kb upstream 5.0kb upstream 12569 true Chr08: 55988260-56000828 Phaseolus vulgaris
Phvul.008G211500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 55995829-56000828 Phaseolus vulgaris
Phvul.008G211500 5.0kb downstream 5.0kb downstream 12569 true Chr08: 55983260-55995828 Phaseolus vulgaris
Phvul.008G211500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 55983260-55988259 Phaseolus vulgaris
Phvul.008G211500 10.0kb upstream 10.0kb upstream 17569 true Chr08: 55988260-56005828 Phaseolus vulgaris
Phvul.008G211500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 55995829-56005828 Phaseolus vulgaris
Phvul.008G211500 10.0kb downstream 10.0kb downstream 17569 true Chr08: 55978260-55995828 Phaseolus vulgaris
Phvul.008G211500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 55978260-55988259 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307883 5265 Fabidae View MSA
124061081 5270 Rosid View MSA
123739346 5271 Pentapetalae View MSA
122787287 5272 Eudicot View MSA
122042056 5273 Angiosperm View MSA
121350076 5274 Embryophyte View MSA
123425500 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.96623 0.0 13.4004    
cufflinks 4.41309 0.0 22.0076    
cufflinks 29.9539 0.0 107.735   High
cufflinks 5.72345 0.0 21.9731    
cufflinks 3.09669 0.0 11.3281    
cufflinks 12.407 0.0 49.7701   High
cufflinks 0.830579 0.0 3.42601    
cufflinks 0.540167 0.0 2.39687   Low
cufflinks 0.319002 0.0 1.45425 Low Low
cufflinks 5.91785 0.0 24.9268    
cufflinks 3.91776 0.0 18.7014    

0 Strain