Gene : Phvul.008G212100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11850//PTHR11850:SF112 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED Genomic Order:  2160
Name:  ? Phvul.008G212100 Secondary Identifier:  ? PAC:37160642
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G212100 0.5kb upstream 0.5kb upstream 5061 true Chr08: 56037645-56042705 Phaseolus vulgaris
Phvul.008G212100 0.5kb upstream 0.5kb upstream 500 false Chr08: 56037645-56038144 Phaseolus vulgaris
Phvul.008G212100 0.5kb downstream 0.5kb downstream 5061 true Chr08: 56038145-56043205 Phaseolus vulgaris
Phvul.008G212100 0.5kb downstream 0.5kb downstream 500 false Chr08: 56042706-56043205 Phaseolus vulgaris
Phvul.008G212100 1.0kb upstream 1.0kb upstream 5561 true Chr08: 56037145-56042705 Phaseolus vulgaris
Phvul.008G212100 1.0kb upstream 1.0kb upstream 1000 false Chr08: 56037145-56038144 Phaseolus vulgaris
Phvul.008G212100 1.0kb downstream 1.0kb downstream 5561 true Chr08: 56038145-56043705 Phaseolus vulgaris
Phvul.008G212100 1.0kb downstream 1.0kb downstream 1000 false Chr08: 56042706-56043705 Phaseolus vulgaris
Phvul.008G212100 2.0kb upstream 2.0kb upstream 6561 true Chr08: 56036145-56042705 Phaseolus vulgaris
Phvul.008G212100 2.0kb upstream 2.0kb upstream 2000 false Chr08: 56036145-56038144 Phaseolus vulgaris
Phvul.008G212100 2.0kb downstream 2.0kb downstream 6561 true Chr08: 56038145-56044705 Phaseolus vulgaris
Phvul.008G212100 2.0kb downstream 2.0kb downstream 2000 false Chr08: 56042706-56044705 Phaseolus vulgaris
Phvul.008G212100 5.0kb upstream 5.0kb upstream 9561 true Chr08: 56033145-56042705 Phaseolus vulgaris
Phvul.008G212100 5.0kb upstream 5.0kb upstream 5000 false Chr08: 56033145-56038144 Phaseolus vulgaris
Phvul.008G212100 5.0kb downstream 5.0kb downstream 9561 true Chr08: 56038145-56047705 Phaseolus vulgaris
Phvul.008G212100 5.0kb downstream 5.0kb downstream 5000 false Chr08: 56042706-56047705 Phaseolus vulgaris
Phvul.008G212100 10.0kb upstream 10.0kb upstream 14561 true Chr08: 56028145-56042705 Phaseolus vulgaris
Phvul.008G212100 10.0kb upstream 10.0kb upstream 10000 false Chr08: 56028145-56038144 Phaseolus vulgaris
Phvul.008G212100 10.0kb downstream 10.0kb downstream 14561 true Chr08: 56038145-56052705 Phaseolus vulgaris
Phvul.008G212100 10.0kb downstream 10.0kb downstream 10000 false Chr08: 56042706-56052705 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296551 5265 Fabidae View MSA
124072037 5270 Rosid View MSA
123750536 5271 Pentapetalae View MSA
122794934 5272 Eudicot View MSA
122051072 5273 Angiosperm View MSA
121351483 5274 Embryophyte View MSA
123428758 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.65253 0.0 18.5072    
cufflinks 2.572 0.0 7.89401    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 9.44746 0.0 25.5408    
cufflinks 11.4478 0.0 30.5432    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.763666 0.0 2.67793    
cufflinks 0.0279686 0.0 0.131289 Low Low
cufflinks 0.102981 0.0 0.427148 Low Low
cufflinks 0.103468 0.0 0.431037 Low Low
cufflinks 28.0655 0.0 72.5795   High

0 Strain