Gene : Phvul.008G197500 P. vulgaris v2.1
Defline:  (1 of 9) PF13041//PF13812 - PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  2013
Name:  ? Phvul.008G197500 Secondary Identifier:  ? PAC:37160783
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G197500 0.5kb upstream 0.5kb upstream 5818 true Chr08: 54164504-54170321 Phaseolus vulgaris
Phvul.008G197500 0.5kb upstream 0.5kb upstream 500 false Chr08: 54169822-54170321 Phaseolus vulgaris
Phvul.008G197500 0.5kb downstream 0.5kb downstream 5818 true Chr08: 54164004-54169821 Phaseolus vulgaris
Phvul.008G197500 0.5kb downstream 0.5kb downstream 500 false Chr08: 54164004-54164503 Phaseolus vulgaris
Phvul.008G197500 1.0kb upstream 1.0kb upstream 6318 true Chr08: 54164504-54170821 Phaseolus vulgaris
Phvul.008G197500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 54169822-54170821 Phaseolus vulgaris
Phvul.008G197500 1.0kb downstream 1.0kb downstream 6318 true Chr08: 54163504-54169821 Phaseolus vulgaris
Phvul.008G197500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 54163504-54164503 Phaseolus vulgaris
Phvul.008G197500 2.0kb upstream 2.0kb upstream 7318 true Chr08: 54164504-54171821 Phaseolus vulgaris
Phvul.008G197500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 54169822-54171821 Phaseolus vulgaris
Phvul.008G197500 2.0kb downstream 2.0kb downstream 7318 true Chr08: 54162504-54169821 Phaseolus vulgaris
Phvul.008G197500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 54162504-54164503 Phaseolus vulgaris
Phvul.008G197500 5.0kb upstream 5.0kb upstream 10318 true Chr08: 54164504-54174821 Phaseolus vulgaris
Phvul.008G197500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 54169822-54174821 Phaseolus vulgaris
Phvul.008G197500 5.0kb downstream 5.0kb downstream 10318 true Chr08: 54159504-54169821 Phaseolus vulgaris
Phvul.008G197500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 54159504-54164503 Phaseolus vulgaris
Phvul.008G197500 10.0kb upstream 10.0kb upstream 15318 true Chr08: 54164504-54179821 Phaseolus vulgaris
Phvul.008G197500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 54169822-54179821 Phaseolus vulgaris
Phvul.008G197500 10.0kb downstream 10.0kb downstream 15318 true Chr08: 54154504-54169821 Phaseolus vulgaris
Phvul.008G197500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 54154504-54164503 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301275 5265 Fabidae View MSA
124060699 5270 Rosid View MSA
123741070 5271 Pentapetalae View MSA
122791611 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.480489 0.0 1.66424   Low
cufflinks 1.12479 0.0 3.54725    
cufflinks 1.65513 0.0 4.97668   High
cufflinks 0.775954 0.0 2.58215    
cufflinks 1.01635 0.0 3.25826    
cufflinks 1.35445 0.0 4.17994    
cufflinks 1.26374 0.0 3.94044    
cufflinks 1.08867 0.0 3.43269    
cufflinks 0.967051 0.0 3.11946    
cufflinks 1.21929 0.0 3.8086    
cufflinks 0.772365 0.0 2.55436    

0 Strain