Gene : Phvul.008G197600 P. vulgaris v2.1
Defline:  (1 of 17) PF02309//PF02362//PF06507 - AUX/IAA family (AUX_IAA) // B3 DNA binding domain (B3) // Auxin response factor (Auxin_resp) Genomic Order:  2014
Name:  ? Phvul.008G197600 Secondary Identifier:  ? PAC:37159337
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G197600 0.5kb upstream 0.5kb upstream 8657 true Chr08: 54171451-54180107 Phaseolus vulgaris
Phvul.008G197600 0.5kb upstream 0.5kb upstream 500 false Chr08: 54179608-54180107 Phaseolus vulgaris
Phvul.008G197600 0.5kb downstream 0.5kb downstream 8657 true Chr08: 54170951-54179607 Phaseolus vulgaris
Phvul.008G197600 0.5kb downstream 0.5kb downstream 500 false Chr08: 54170951-54171450 Phaseolus vulgaris
Phvul.008G197600 1.0kb upstream 1.0kb upstream 9157 true Chr08: 54171451-54180607 Phaseolus vulgaris
Phvul.008G197600 1.0kb upstream 1.0kb upstream 1000 false Chr08: 54179608-54180607 Phaseolus vulgaris
Phvul.008G197600 1.0kb downstream 1.0kb downstream 9157 true Chr08: 54170451-54179607 Phaseolus vulgaris
Phvul.008G197600 1.0kb downstream 1.0kb downstream 1000 false Chr08: 54170451-54171450 Phaseolus vulgaris
Phvul.008G197600 2.0kb upstream 2.0kb upstream 10157 true Chr08: 54171451-54181607 Phaseolus vulgaris
Phvul.008G197600 2.0kb upstream 2.0kb upstream 2000 false Chr08: 54179608-54181607 Phaseolus vulgaris
Phvul.008G197600 2.0kb downstream 2.0kb downstream 10157 true Chr08: 54169451-54179607 Phaseolus vulgaris
Phvul.008G197600 2.0kb downstream 2.0kb downstream 2000 false Chr08: 54169451-54171450 Phaseolus vulgaris
Phvul.008G197600 5.0kb upstream 5.0kb upstream 13157 true Chr08: 54171451-54184607 Phaseolus vulgaris
Phvul.008G197600 5.0kb upstream 5.0kb upstream 5000 false Chr08: 54179608-54184607 Phaseolus vulgaris
Phvul.008G197600 5.0kb downstream 5.0kb downstream 13157 true Chr08: 54166451-54179607 Phaseolus vulgaris
Phvul.008G197600 5.0kb downstream 5.0kb downstream 5000 false Chr08: 54166451-54171450 Phaseolus vulgaris
Phvul.008G197600 10.0kb upstream 10.0kb upstream 18157 true Chr08: 54171451-54189607 Phaseolus vulgaris
Phvul.008G197600 10.0kb upstream 10.0kb upstream 10000 false Chr08: 54179608-54189607 Phaseolus vulgaris
Phvul.008G197600 10.0kb downstream 10.0kb downstream 18157 true Chr08: 54161451-54179607 Phaseolus vulgaris
Phvul.008G197600 10.0kb downstream 10.0kb downstream 10000 false Chr08: 54161451-54171450 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306974 5265 Fabidae View MSA
124073389 5270 Rosid View MSA
123749111 5271 Pentapetalae View MSA
122793528 5272 Eudicot View MSA
122048595 5273 Angiosperm View MSA
121351367 5274 Embryophyte View MSA
123382140 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.6655 0.0 30.2001   Low
cufflinks 27.2154 0.0 71.8391    
cufflinks 11.4095 0.0 29.5366   Low
cufflinks 15.8409 0.0 40.9651    
cufflinks 28.5792 0.0 75.5241    
cufflinks 14.8023 0.0 38.2662    
cufflinks 21.079 0.0 54.9544    
cufflinks 12.4561 0.0 32.2066    
cufflinks 19.4862 0.0 50.6249    
cufflinks 47.9815 0.0 132.811 High High
cufflinks 25.1564 0.0 65.9691    

0 Strain