Gene : Phvul.008G200700 P. vulgaris v2.1
Defline:  (1 of 4) PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 Genomic Order:  2046
Name:  ? Phvul.008G200700 Secondary Identifier:  ? PAC:37161236
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G200700 0.5kb upstream 0.5kb upstream 3149 true Chr08: 54692297-54695445 Phaseolus vulgaris
Phvul.008G200700 0.5kb upstream 0.5kb upstream 500 false Chr08: 54692297-54692796 Phaseolus vulgaris
Phvul.008G200700 0.5kb downstream 0.5kb downstream 3149 true Chr08: 54692797-54695945 Phaseolus vulgaris
Phvul.008G200700 0.5kb downstream 0.5kb downstream 500 false Chr08: 54695446-54695945 Phaseolus vulgaris
Phvul.008G200700 1.0kb upstream 1.0kb upstream 3649 true Chr08: 54691797-54695445 Phaseolus vulgaris
Phvul.008G200700 1.0kb upstream 1.0kb upstream 1000 false Chr08: 54691797-54692796 Phaseolus vulgaris
Phvul.008G200700 1.0kb downstream 1.0kb downstream 3649 true Chr08: 54692797-54696445 Phaseolus vulgaris
Phvul.008G200700 1.0kb downstream 1.0kb downstream 1000 false Chr08: 54695446-54696445 Phaseolus vulgaris
Phvul.008G200700 2.0kb upstream 2.0kb upstream 4649 true Chr08: 54690797-54695445 Phaseolus vulgaris
Phvul.008G200700 2.0kb upstream 2.0kb upstream 2000 false Chr08: 54690797-54692796 Phaseolus vulgaris
Phvul.008G200700 2.0kb downstream 2.0kb downstream 4649 true Chr08: 54692797-54697445 Phaseolus vulgaris
Phvul.008G200700 2.0kb downstream 2.0kb downstream 2000 false Chr08: 54695446-54697445 Phaseolus vulgaris
Phvul.008G200700 5.0kb upstream 5.0kb upstream 7649 true Chr08: 54687797-54695445 Phaseolus vulgaris
Phvul.008G200700 5.0kb upstream 5.0kb upstream 5000 false Chr08: 54687797-54692796 Phaseolus vulgaris
Phvul.008G200700 5.0kb downstream 5.0kb downstream 7649 true Chr08: 54692797-54700445 Phaseolus vulgaris
Phvul.008G200700 5.0kb downstream 5.0kb downstream 5000 false Chr08: 54695446-54700445 Phaseolus vulgaris
Phvul.008G200700 10.0kb upstream 10.0kb upstream 12649 true Chr08: 54682797-54695445 Phaseolus vulgaris
Phvul.008G200700 10.0kb upstream 10.0kb upstream 10000 false Chr08: 54682797-54692796 Phaseolus vulgaris
Phvul.008G200700 10.0kb downstream 10.0kb downstream 12649 true Chr08: 54692797-54705445 Phaseolus vulgaris
Phvul.008G200700 10.0kb downstream 10.0kb downstream 10000 false Chr08: 54695446-54705445 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310499 5265 Fabidae View MSA
124069167 5270 Rosid View MSA
123749314 5271 Pentapetalae View MSA
122796752 5272 Eudicot View MSA
122049669 5273 Angiosperm View MSA
121344202 5274 Embryophyte View MSA
123379999 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.62749 0.0 10.3069    
cufflinks 5.6996 0.0 15.5563    
cufflinks 1.19098 0.0 3.84159   Low
cufflinks 3.00048 0.0 8.69103    
cufflinks 5.67724 0.0 15.4783    
cufflinks 2.82844 0.0 8.25143    
cufflinks 28.0066 0.0 73.4715 High High
cufflinks 44.4237 0.0 120.495 High High
cufflinks 9.92714 0.0 25.9374    
cufflinks 15.301 0.0 39.5767    
cufflinks 8.39087 0.0 22.1919    

0 Strain