Gene : Phvul.008G199700 P. vulgaris v2.1
Defline:  (1 of 1) PTHR24031:SF326 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-RELATED Genomic Order:  2036
Name:  ? Phvul.008G199700 Secondary Identifier:  ? PAC:37157808
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G199700 0.5kb upstream 0.5kb upstream 5108 true Chr08: 54530222-54535329 Phaseolus vulgaris
Phvul.008G199700 0.5kb upstream 0.5kb upstream 500 false Chr08: 54534830-54535329 Phaseolus vulgaris
Phvul.008G199700 0.5kb downstream 0.5kb downstream 5108 true Chr08: 54529722-54534829 Phaseolus vulgaris
Phvul.008G199700 0.5kb downstream 0.5kb downstream 500 false Chr08: 54529722-54530221 Phaseolus vulgaris
Phvul.008G199700 1.0kb upstream 1.0kb upstream 5608 true Chr08: 54530222-54535829 Phaseolus vulgaris
Phvul.008G199700 1.0kb upstream 1.0kb upstream 1000 false Chr08: 54534830-54535829 Phaseolus vulgaris
Phvul.008G199700 1.0kb downstream 1.0kb downstream 5608 true Chr08: 54529222-54534829 Phaseolus vulgaris
Phvul.008G199700 1.0kb downstream 1.0kb downstream 1000 false Chr08: 54529222-54530221 Phaseolus vulgaris
Phvul.008G199700 2.0kb upstream 2.0kb upstream 6608 true Chr08: 54530222-54536829 Phaseolus vulgaris
Phvul.008G199700 2.0kb upstream 2.0kb upstream 2000 false Chr08: 54534830-54536829 Phaseolus vulgaris
Phvul.008G199700 2.0kb downstream 2.0kb downstream 6608 true Chr08: 54528222-54534829 Phaseolus vulgaris
Phvul.008G199700 2.0kb downstream 2.0kb downstream 2000 false Chr08: 54528222-54530221 Phaseolus vulgaris
Phvul.008G199700 5.0kb upstream 5.0kb upstream 9608 true Chr08: 54530222-54539829 Phaseolus vulgaris
Phvul.008G199700 5.0kb upstream 5.0kb upstream 5000 false Chr08: 54534830-54539829 Phaseolus vulgaris
Phvul.008G199700 5.0kb downstream 5.0kb downstream 9608 true Chr08: 54525222-54534829 Phaseolus vulgaris
Phvul.008G199700 5.0kb downstream 5.0kb downstream 5000 false Chr08: 54525222-54530221 Phaseolus vulgaris
Phvul.008G199700 10.0kb upstream 10.0kb upstream 14608 true Chr08: 54530222-54544829 Phaseolus vulgaris
Phvul.008G199700 10.0kb upstream 10.0kb upstream 10000 false Chr08: 54534830-54544829 Phaseolus vulgaris
Phvul.008G199700 10.0kb downstream 10.0kb downstream 14608 true Chr08: 54520222-54534829 Phaseolus vulgaris
Phvul.008G199700 10.0kb downstream 10.0kb downstream 10000 false Chr08: 54520222-54530221 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300016 5265 Fabidae View MSA
124062344 5270 Rosid View MSA
123751668 5271 Pentapetalae View MSA
122790470 5272 Eudicot View MSA
122044594 5273 Angiosperm View MSA
121310318 5274 Embryophyte View MSA
123426449 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.216 0.0 44.5058    
cufflinks 26.8943 0.0 70.249   High
cufflinks 15.5037 0.0 40.0908    
cufflinks 19.91 0.0 51.4967    
cufflinks 20.3868 0.0 52.7554    
cufflinks 13.9809 0.0 36.1908   Low
cufflinks 15.327 0.0 39.6297    
cufflinks 16.7469 0.0 43.2895    
cufflinks 15.982 0.0 41.3219    
cufflinks 27.2578 0.0 71.2695   High
cufflinks 20.2434 0.0 52.3904    

0 Strain