Gene : Phvul.008G199500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR13343:SF18 - PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-LIKE PROTEIN Genomic Order:  2034
Name:  ? Phvul.008G199500 Secondary Identifier:  ? PAC:37158415
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G199500 0.5kb upstream 0.5kb upstream 7091 true Chr08: 54511994-54519084 Phaseolus vulgaris
Phvul.008G199500 0.5kb upstream 0.5kb upstream 500 false Chr08: 54511994-54512493 Phaseolus vulgaris
Phvul.008G199500 0.5kb downstream 0.5kb downstream 7091 true Chr08: 54512494-54519584 Phaseolus vulgaris
Phvul.008G199500 0.5kb downstream 0.5kb downstream 500 false Chr08: 54519085-54519584 Phaseolus vulgaris
Phvul.008G199500 1.0kb upstream 1.0kb upstream 7591 true Chr08: 54511494-54519084 Phaseolus vulgaris
Phvul.008G199500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 54511494-54512493 Phaseolus vulgaris
Phvul.008G199500 1.0kb downstream 1.0kb downstream 7591 true Chr08: 54512494-54520084 Phaseolus vulgaris
Phvul.008G199500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 54519085-54520084 Phaseolus vulgaris
Phvul.008G199500 2.0kb upstream 2.0kb upstream 8591 true Chr08: 54510494-54519084 Phaseolus vulgaris
Phvul.008G199500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 54510494-54512493 Phaseolus vulgaris
Phvul.008G199500 2.0kb downstream 2.0kb downstream 8591 true Chr08: 54512494-54521084 Phaseolus vulgaris
Phvul.008G199500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 54519085-54521084 Phaseolus vulgaris
Phvul.008G199500 5.0kb upstream 5.0kb upstream 11591 true Chr08: 54507494-54519084 Phaseolus vulgaris
Phvul.008G199500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 54507494-54512493 Phaseolus vulgaris
Phvul.008G199500 5.0kb downstream 5.0kb downstream 11591 true Chr08: 54512494-54524084 Phaseolus vulgaris
Phvul.008G199500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 54519085-54524084 Phaseolus vulgaris
Phvul.008G199500 10.0kb upstream 10.0kb upstream 16591 true Chr08: 54502494-54519084 Phaseolus vulgaris
Phvul.008G199500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 54502494-54512493 Phaseolus vulgaris
Phvul.008G199500 10.0kb downstream 10.0kb downstream 16591 true Chr08: 54512494-54529084 Phaseolus vulgaris
Phvul.008G199500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 54519085-54529084 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302754 5265 Fabidae View MSA
124068606 5270 Rosid View MSA
123738942 5271 Pentapetalae View MSA
122769938 5272 Eudicot View MSA
122050575 5273 Angiosperm View MSA
121348228 5274 Embryophyte View MSA
123380781 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.81255 0.0 11.3102    
cufflinks 4.70862 0.0 13.6496    
cufflinks 22.3042 0.0 57.7297   High
cufflinks 6.63262 0.0 18.6745    
cufflinks 3.28988 0.0 10.0232    
cufflinks 6.37426 0.0 17.9216    
cufflinks 3.35527 0.0 10.134    
cufflinks 6.17487 0.0 17.3865    
cufflinks 3.22158 0.0 9.7896    
cufflinks 11.5252 0.0 30.8076   High
cufflinks 3.13182 0.0 9.57382    

0 Strain