Gene : Phvul.008G201800 P. vulgaris v2.1
Defline:  (1 of 1) PF00581//PF13616 - Rhodanese-like domain (Rhodanese) // PPIC-type PPIASE domain (Rotamase_3) Genomic Order:  2057
Name:  ? Phvul.008G201800 Secondary Identifier:  ? PAC:37158888
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G201800 0.5kb upstream 0.5kb upstream 3751 true Chr08: 54860298-54864048 Phaseolus vulgaris
Phvul.008G201800 0.5kb upstream 0.5kb upstream 500 false Chr08: 54860298-54860797 Phaseolus vulgaris
Phvul.008G201800 0.5kb downstream 0.5kb downstream 3751 true Chr08: 54860798-54864548 Phaseolus vulgaris
Phvul.008G201800 0.5kb downstream 0.5kb downstream 500 false Chr08: 54864049-54864548 Phaseolus vulgaris
Phvul.008G201800 1.0kb upstream 1.0kb upstream 4251 true Chr08: 54859798-54864048 Phaseolus vulgaris
Phvul.008G201800 1.0kb upstream 1.0kb upstream 1000 false Chr08: 54859798-54860797 Phaseolus vulgaris
Phvul.008G201800 1.0kb downstream 1.0kb downstream 4251 true Chr08: 54860798-54865048 Phaseolus vulgaris
Phvul.008G201800 1.0kb downstream 1.0kb downstream 1000 false Chr08: 54864049-54865048 Phaseolus vulgaris
Phvul.008G201800 2.0kb upstream 2.0kb upstream 5251 true Chr08: 54858798-54864048 Phaseolus vulgaris
Phvul.008G201800 2.0kb upstream 2.0kb upstream 2000 false Chr08: 54858798-54860797 Phaseolus vulgaris
Phvul.008G201800 2.0kb downstream 2.0kb downstream 5251 true Chr08: 54860798-54866048 Phaseolus vulgaris
Phvul.008G201800 2.0kb downstream 2.0kb downstream 2000 false Chr08: 54864049-54866048 Phaseolus vulgaris
Phvul.008G201800 5.0kb upstream 5.0kb upstream 8251 true Chr08: 54855798-54864048 Phaseolus vulgaris
Phvul.008G201800 5.0kb upstream 5.0kb upstream 5000 false Chr08: 54855798-54860797 Phaseolus vulgaris
Phvul.008G201800 5.0kb downstream 5.0kb downstream 8251 true Chr08: 54860798-54869048 Phaseolus vulgaris
Phvul.008G201800 5.0kb downstream 5.0kb downstream 5000 false Chr08: 54864049-54869048 Phaseolus vulgaris
Phvul.008G201800 10.0kb upstream 10.0kb upstream 13251 true Chr08: 54850798-54864048 Phaseolus vulgaris
Phvul.008G201800 10.0kb upstream 10.0kb upstream 10000 false Chr08: 54850798-54860797 Phaseolus vulgaris
Phvul.008G201800 10.0kb downstream 10.0kb downstream 13251 true Chr08: 54860798-54874048 Phaseolus vulgaris
Phvul.008G201800 10.0kb downstream 10.0kb downstream 10000 false Chr08: 54864049-54874048 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301970 5265 Fabidae View MSA
124073130 5270 Rosid View MSA
123738142 5271 Pentapetalae View MSA
122789863 5272 Eudicot View MSA
122041568 5273 Angiosperm View MSA
123429014 5275 Viridiplantae View MSA
121344744 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.569 0.0 34.6225    
cufflinks 20.3412 0.0 53.9008    
cufflinks 66.9724 0.0 174.98 High High
cufflinks 18.5581 0.0 49.8121    
cufflinks 11.364 0.0 31.7707    
cufflinks 30.1524 0.0 78.2994    
cufflinks 4.09321 0.0 12.676   Low
cufflinks 6.20138 0.0 18.2338    
cufflinks 4.74863 0.0 14.4952   Low
cufflinks 16.9945 0.0 45.6785    
cufflinks 10.1523 0.0 28.5936    

0 Strain