Gene : Phvul.L002946 P. vulgaris v2.1
Defline:  (1 of 2) PTHR23335:SF1 - CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 Genomic Order:  14
Name:  ? Phvul.L002946 Secondary Identifier:  ? PAC:37174288
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.L002946 0.5kb upstream 0.5kb upstream 9619 true scaffold_17: 314832-324450 Phaseolus vulgaris
Phvul.L002946 0.5kb upstream 0.5kb upstream 500 false scaffold_17: 323951-324450 Phaseolus vulgaris
Phvul.L002946 0.5kb downstream 0.5kb downstream 9619 true scaffold_17: 314332-323950 Phaseolus vulgaris
Phvul.L002946 0.5kb downstream 0.5kb downstream 500 false scaffold_17: 314332-314831 Phaseolus vulgaris
Phvul.L002946 1.0kb upstream 1.0kb upstream 10119 true scaffold_17: 314832-324950 Phaseolus vulgaris
Phvul.L002946 1.0kb upstream 1.0kb upstream 1000 false scaffold_17: 323951-324950 Phaseolus vulgaris
Phvul.L002946 1.0kb downstream 1.0kb downstream 10119 true scaffold_17: 313832-323950 Phaseolus vulgaris
Phvul.L002946 1.0kb downstream 1.0kb downstream 1000 false scaffold_17: 313832-314831 Phaseolus vulgaris
Phvul.L002946 2.0kb upstream 2.0kb upstream 11119 true scaffold_17: 314832-325950 Phaseolus vulgaris
Phvul.L002946 2.0kb upstream 2.0kb upstream 2000 false scaffold_17: 323951-325950 Phaseolus vulgaris
Phvul.L002946 2.0kb downstream 2.0kb downstream 11119 true scaffold_17: 312832-323950 Phaseolus vulgaris
Phvul.L002946 2.0kb downstream 2.0kb downstream 2000 false scaffold_17: 312832-314831 Phaseolus vulgaris
Phvul.L002946 5.0kb upstream 5.0kb upstream 14119 true scaffold_17: 314832-328950 Phaseolus vulgaris
Phvul.L002946 5.0kb upstream 5.0kb upstream 5000 false scaffold_17: 323951-328950 Phaseolus vulgaris
Phvul.L002946 5.0kb downstream 5.0kb downstream 14119 true scaffold_17: 309832-323950 Phaseolus vulgaris
Phvul.L002946 5.0kb downstream 5.0kb downstream 5000 false scaffold_17: 309832-314831 Phaseolus vulgaris
Phvul.L002946 10.0kb upstream 10.0kb upstream 19119 true scaffold_17: 314832-333950 Phaseolus vulgaris
Phvul.L002946 10.0kb upstream 10.0kb upstream 10000 false scaffold_17: 323951-333950 Phaseolus vulgaris
Phvul.L002946 10.0kb downstream 10.0kb downstream 19119 true scaffold_17: 304832-323950 Phaseolus vulgaris
Phvul.L002946 10.0kb downstream 10.0kb downstream 10000 false scaffold_17: 304832-314831 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307370 5265 Fabidae View MSA
124064379 5270 Rosid View MSA
123737526 5271 Pentapetalae View MSA
122795651 5272 Eudicot View MSA
122049941 5273 Angiosperm View MSA
121311657 5274 Embryophyte View MSA
123348927 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.72938 0.0 21.5297   Low
cufflinks 10.9585 0.0 38.77    
cufflinks 8.03959 0.0 26.1655    
cufflinks 4.206 0.0 13.1058   Low
cufflinks 9.20451 0.0 32.9981    
cufflinks 12.5115 0.0 44.1799   High
cufflinks 8.88744 0.0 28.4907    
cufflinks 8.16294 0.0 29.2334    
cufflinks 7.03309 0.0 23.0838    
cufflinks 10.4014 0.0 37.0036    
cufflinks 10.1427 0.0 36.1129    

0 Strain