Gene : Phvul.L002646 P. vulgaris v2.1
Defline:  (1 of 2) PTHR15601 - STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN SERP1/RAMP4 Genomic Order:  11
Name:  ? Phvul.L002646 Secondary Identifier:  ? PAC:37174310
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.L002646 0.5kb upstream 0.5kb upstream 2519 true scaffold_17: 240441-242959 Phaseolus vulgaris
Phvul.L002646 0.5kb upstream 0.5kb upstream 500 false scaffold_17: 242460-242959 Phaseolus vulgaris
Phvul.L002646 0.5kb downstream 0.5kb downstream 2519 true scaffold_17: 239941-242459 Phaseolus vulgaris
Phvul.L002646 0.5kb downstream 0.5kb downstream 500 false scaffold_17: 239941-240440 Phaseolus vulgaris
Phvul.L002646 1.0kb upstream 1.0kb upstream 3019 true scaffold_17: 240441-243459 Phaseolus vulgaris
Phvul.L002646 1.0kb upstream 1.0kb upstream 1000 false scaffold_17: 242460-243459 Phaseolus vulgaris
Phvul.L002646 1.0kb downstream 1.0kb downstream 3019 true scaffold_17: 239441-242459 Phaseolus vulgaris
Phvul.L002646 1.0kb downstream 1.0kb downstream 1000 false scaffold_17: 239441-240440 Phaseolus vulgaris
Phvul.L002646 2.0kb upstream 2.0kb upstream 4019 true scaffold_17: 240441-244459 Phaseolus vulgaris
Phvul.L002646 2.0kb upstream 2.0kb upstream 2000 false scaffold_17: 242460-244459 Phaseolus vulgaris
Phvul.L002646 2.0kb downstream 2.0kb downstream 4019 true scaffold_17: 238441-242459 Phaseolus vulgaris
Phvul.L002646 2.0kb downstream 2.0kb downstream 2000 false scaffold_17: 238441-240440 Phaseolus vulgaris
Phvul.L002646 5.0kb upstream 5.0kb upstream 7019 true scaffold_17: 240441-247459 Phaseolus vulgaris
Phvul.L002646 5.0kb upstream 5.0kb upstream 5000 false scaffold_17: 242460-247459 Phaseolus vulgaris
Phvul.L002646 5.0kb downstream 5.0kb downstream 7019 true scaffold_17: 235441-242459 Phaseolus vulgaris
Phvul.L002646 5.0kb downstream 5.0kb downstream 5000 false scaffold_17: 235441-240440 Phaseolus vulgaris
Phvul.L002646 10.0kb upstream 10.0kb upstream 12019 true scaffold_17: 240441-252459 Phaseolus vulgaris
Phvul.L002646 10.0kb upstream 10.0kb upstream 10000 false scaffold_17: 242460-252459 Phaseolus vulgaris
Phvul.L002646 10.0kb downstream 10.0kb downstream 12019 true scaffold_17: 230441-242459 Phaseolus vulgaris
Phvul.L002646 10.0kb downstream 10.0kb downstream 10000 false scaffold_17: 230441-240440 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309793 5265 Fabidae View MSA
124071023 5270 Rosid View MSA
123745695 5271 Pentapetalae View MSA
122795442 5272 Eudicot View MSA
122050162 5273 Angiosperm View MSA
121345372 5274 Embryophyte View MSA
123428764 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 166.861 0.0 440.835 High  
cufflinks 137.587 0.0 359.275 High  
cufflinks 59.7941 0.0 155.422 High Low
cufflinks 234.729 0.0 634.036 High High
cufflinks 110.061 0.0 285.231 High  
cufflinks 76.7493 0.0 198.512 High Low
cufflinks 80.9239 0.0 209.188 High  
cufflinks 168.036 0.0 444.361 High  
cufflinks 99.209 0.0 256.651 High  
cufflinks 173.63 0.0 459.792 High  
cufflinks 113.197 0.0 293.573 High  

0 Strain