Gene : Phvul.L001746 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10509:SF20 - S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN-RELATED Genomic Order:  2
Name:  ? Phvul.L001746 Secondary Identifier:  ? PAC:37174323
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5391 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.L001746 0.5kb upstream 0.5kb upstream 10071 true scaffold_17: 18786-28856 Phaseolus vulgaris
Phvul.L001746 0.5kb upstream 0.5kb upstream 500 false scaffold_17: 18786-19285 Phaseolus vulgaris
Phvul.L001746 0.5kb downstream 0.5kb downstream 10071 true scaffold_17: 19286-29356 Phaseolus vulgaris
Phvul.L001746 0.5kb downstream 0.5kb downstream 500 false scaffold_17: 28857-29356 Phaseolus vulgaris
Phvul.L001746 1.0kb upstream 1.0kb upstream 10571 true scaffold_17: 18286-28856 Phaseolus vulgaris
Phvul.L001746 1.0kb upstream 1.0kb upstream 1000 false scaffold_17: 18286-19285 Phaseolus vulgaris
Phvul.L001746 1.0kb downstream 1.0kb downstream 10571 true scaffold_17: 19286-29856 Phaseolus vulgaris
Phvul.L001746 1.0kb downstream 1.0kb downstream 1000 false scaffold_17: 28857-29856 Phaseolus vulgaris
Phvul.L001746 2.0kb upstream 2.0kb upstream 11571 true scaffold_17: 17286-28856 Phaseolus vulgaris
Phvul.L001746 2.0kb upstream 2.0kb upstream 2000 false scaffold_17: 17286-19285 Phaseolus vulgaris
Phvul.L001746 2.0kb downstream 2.0kb downstream 11571 true scaffold_17: 19286-30856 Phaseolus vulgaris
Phvul.L001746 2.0kb downstream 2.0kb downstream 2000 false scaffold_17: 28857-30856 Phaseolus vulgaris
Phvul.L001746 5.0kb upstream 5.0kb upstream 14571 true scaffold_17: 14286-28856 Phaseolus vulgaris
Phvul.L001746 5.0kb upstream 5.0kb upstream 5000 false scaffold_17: 14286-19285 Phaseolus vulgaris
Phvul.L001746 5.0kb downstream 5.0kb downstream 14571 true scaffold_17: 19286-33856 Phaseolus vulgaris
Phvul.L001746 5.0kb downstream 5.0kb downstream 5000 false scaffold_17: 28857-33856 Phaseolus vulgaris
Phvul.L001746 10.0kb upstream 10.0kb upstream 19571 true scaffold_17: 9286-28856 Phaseolus vulgaris
Phvul.L001746 10.0kb upstream 10.0kb upstream 10000 false scaffold_17: 9286-19285 Phaseolus vulgaris
Phvul.L001746 10.0kb downstream 10.0kb downstream 19571 true scaffold_17: 19286-38856 Phaseolus vulgaris
Phvul.L001746 10.0kb downstream 10.0kb downstream 10000 false scaffold_17: 28857-38856 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121779201 5273 Angiosperm View MSA
122301129 5265 Fabidae View MSA
124066642 5270 Rosid View MSA
123738230 5271 Pentapetalae View MSA
122769915 5272 Eudicot View MSA
121050882 5274 Embryophyte View MSA
123427843 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.554493 0.0 2.13914    
cufflinks 0.138658 0.0 0.600169 Low Low
cufflinks 0.967911 0.0 3.56967    
cufflinks 0.800155 0.0 3.01526    
cufflinks 0.68281 0.0 2.61455    
cufflinks 1.27062 0.0 4.56677    
cufflinks 19.409 0.0 52.244   High
cufflinks 10.5029 0.0 29.7678   High
cufflinks 50.8075 0.0 131.328 High High
cufflinks 0.0801581 0.0 0.367593 Low Low
cufflinks 0.54314 0.0 2.10817    

0 Strain