Gene : Phvul.L003746 P. vulgaris v2.1
Defline:  (1 of 9) PF01823 - MAC/Perforin domain (MACPF) Genomic Order:  22
Name:  ? Phvul.L003746 Secondary Identifier:  ? PAC:37174306
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.L003746 0.5kb upstream 0.5kb upstream 6352 true scaffold_17: 527716-534067 Phaseolus vulgaris
Phvul.L003746 0.5kb upstream 0.5kb upstream 500 false scaffold_17: 533568-534067 Phaseolus vulgaris
Phvul.L003746 0.5kb downstream 0.5kb downstream 6352 true scaffold_17: 527216-533567 Phaseolus vulgaris
Phvul.L003746 0.5kb downstream 0.5kb downstream 500 false scaffold_17: 527216-527715 Phaseolus vulgaris
Phvul.L003746 1.0kb upstream 1.0kb upstream 6852 true scaffold_17: 527716-534567 Phaseolus vulgaris
Phvul.L003746 1.0kb upstream 1.0kb upstream 1000 false scaffold_17: 533568-534567 Phaseolus vulgaris
Phvul.L003746 1.0kb downstream 1.0kb downstream 6852 true scaffold_17: 526716-533567 Phaseolus vulgaris
Phvul.L003746 1.0kb downstream 1.0kb downstream 1000 false scaffold_17: 526716-527715 Phaseolus vulgaris
Phvul.L003746 2.0kb upstream 2.0kb upstream 7852 true scaffold_17: 527716-535567 Phaseolus vulgaris
Phvul.L003746 2.0kb upstream 2.0kb upstream 2000 false scaffold_17: 533568-535567 Phaseolus vulgaris
Phvul.L003746 2.0kb downstream 2.0kb downstream 7852 true scaffold_17: 525716-533567 Phaseolus vulgaris
Phvul.L003746 2.0kb downstream 2.0kb downstream 2000 false scaffold_17: 525716-527715 Phaseolus vulgaris
Phvul.L003746 5.0kb upstream 5.0kb upstream 10852 true scaffold_17: 527716-538567 Phaseolus vulgaris
Phvul.L003746 5.0kb upstream 5.0kb upstream 5000 false scaffold_17: 533568-538567 Phaseolus vulgaris
Phvul.L003746 5.0kb downstream 5.0kb downstream 10852 true scaffold_17: 522716-533567 Phaseolus vulgaris
Phvul.L003746 5.0kb downstream 5.0kb downstream 5000 false scaffold_17: 522716-527715 Phaseolus vulgaris
Phvul.L003746 10.0kb upstream 10.0kb upstream 15852 true scaffold_17: 527716-543567 Phaseolus vulgaris
Phvul.L003746 10.0kb upstream 10.0kb upstream 10000 false scaffold_17: 533568-543567 Phaseolus vulgaris
Phvul.L003746 10.0kb downstream 10.0kb downstream 15852 true scaffold_17: 517716-533567 Phaseolus vulgaris
Phvul.L003746 10.0kb downstream 10.0kb downstream 10000 false scaffold_17: 517716-527715 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301501 5265 Fabidae View MSA
124070099 5270 Rosid View MSA
123749357 5271 Pentapetalae View MSA
122797493 5272 Eudicot View MSA
122048328 5273 Angiosperm View MSA
121310931 5274 Embryophyte View MSA
123348303 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.19243 0.0 25.6259   Low
cufflinks 8.90435 0.0 30.2853   Low
cufflinks 17.8892 0.0 56.8964   High
cufflinks 13.8302 0.0 44.8861    
cufflinks 15.1506 0.0 48.9868    
cufflinks 12.4473 0.0 40.3517    
cufflinks 13.624 0.0 43.9392    
cufflinks 15.845 0.0 50.5134    
cufflinks 12.5515 0.0 41.214    
cufflinks 16.2716 0.0 52.1114    
cufflinks 14.0904 0.0 45.4415    

0 Strain