Gene : Phvul.L003846 P. vulgaris v2.1
Defline:  (1 of 1) K12626 - U6 snRNA-associated Sm-like protein LSm7 (LSM7) Genomic Order:  23
Name:  ? Phvul.L003846 Secondary Identifier:  ? PAC:37174301
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.L003846 0.5kb upstream 0.5kb upstream 4383 true scaffold_17: 547424-551806 Phaseolus vulgaris
Phvul.L003846 0.5kb upstream 0.5kb upstream 500 false scaffold_17: 551307-551806 Phaseolus vulgaris
Phvul.L003846 0.5kb downstream 0.5kb downstream 4383 true scaffold_17: 546924-551306 Phaseolus vulgaris
Phvul.L003846 0.5kb downstream 0.5kb downstream 500 false scaffold_17: 546924-547423 Phaseolus vulgaris
Phvul.L003846 1.0kb upstream 1.0kb upstream 4883 true scaffold_17: 547424-552306 Phaseolus vulgaris
Phvul.L003846 1.0kb upstream 1.0kb upstream 1000 false scaffold_17: 551307-552306 Phaseolus vulgaris
Phvul.L003846 1.0kb downstream 1.0kb downstream 4883 true scaffold_17: 546424-551306 Phaseolus vulgaris
Phvul.L003846 1.0kb downstream 1.0kb downstream 1000 false scaffold_17: 546424-547423 Phaseolus vulgaris
Phvul.L003846 2.0kb upstream 2.0kb upstream 5883 true scaffold_17: 547424-553306 Phaseolus vulgaris
Phvul.L003846 2.0kb upstream 2.0kb upstream 2000 false scaffold_17: 551307-553306 Phaseolus vulgaris
Phvul.L003846 2.0kb downstream 2.0kb downstream 5883 true scaffold_17: 545424-551306 Phaseolus vulgaris
Phvul.L003846 2.0kb downstream 2.0kb downstream 2000 false scaffold_17: 545424-547423 Phaseolus vulgaris
Phvul.L003846 5.0kb upstream 5.0kb upstream 8883 true scaffold_17: 547424-556306 Phaseolus vulgaris
Phvul.L003846 5.0kb upstream 5.0kb upstream 5000 false scaffold_17: 551307-556306 Phaseolus vulgaris
Phvul.L003846 5.0kb downstream 5.0kb downstream 8883 true scaffold_17: 542424-551306 Phaseolus vulgaris
Phvul.L003846 5.0kb downstream 5.0kb downstream 5000 false scaffold_17: 542424-547423 Phaseolus vulgaris
Phvul.L003846 10.0kb upstream 10.0kb upstream 13883 true scaffold_17: 547424-561306 Phaseolus vulgaris
Phvul.L003846 10.0kb upstream 10.0kb upstream 10000 false scaffold_17: 551307-561306 Phaseolus vulgaris
Phvul.L003846 10.0kb downstream 10.0kb downstream 13883 true scaffold_17: 537424-551306 Phaseolus vulgaris
Phvul.L003846 10.0kb downstream 10.0kb downstream 10000 false scaffold_17: 537424-547423 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306096 5265 Fabidae View MSA
124062559 5270 Rosid View MSA
123737808 5271 Pentapetalae View MSA
122791526 5272 Eudicot View MSA
122051368 5273 Angiosperm View MSA
121349484 5274 Embryophyte View MSA
123423999 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 62.6578 0.0 162.414 High High
cufflinks 45.1096 0.0 118.774 High  
cufflinks 41.0118 0.0 108.265 High  
cufflinks 57.1204 0.0 148.54 High High
cufflinks 45.4546 0.0 119.757 High  
cufflinks 38.889 0.0 103.243 High  
cufflinks 43.7775 0.0 115.379 High  
cufflinks 50.6021 0.0 132.262 High  
cufflinks 43.8395 0.0 115.459 High  
cufflinks 25.9555 0.0 71.376   Low
cufflinks 47.4752 0.0 124.752 High  

0 Strain