Gene : Phvul.008G287100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR23198:SF0 - NUCLEAR PORE COMPLEX PROTEIN NUP96 HOMOLOG Genomic Order:  2889
Name:  ? Phvul.008G287100 Secondary Identifier:  ? PAC:37161513
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G287100 0.5kb upstream 0.5kb upstream 6952 true Chr08: 62636829-62643780 Phaseolus vulgaris
Phvul.008G287100 0.5kb upstream 0.5kb upstream 500 false Chr08: 62636829-62637328 Phaseolus vulgaris
Phvul.008G287100 0.5kb downstream 0.5kb downstream 6952 true Chr08: 62637329-62644280 Phaseolus vulgaris
Phvul.008G287100 0.5kb downstream 0.5kb downstream 500 false Chr08: 62643781-62644280 Phaseolus vulgaris
Phvul.008G287100 1.0kb upstream 1.0kb upstream 7452 true Chr08: 62636329-62643780 Phaseolus vulgaris
Phvul.008G287100 1.0kb upstream 1.0kb upstream 1000 false Chr08: 62636329-62637328 Phaseolus vulgaris
Phvul.008G287100 1.0kb downstream 1.0kb downstream 7452 true Chr08: 62637329-62644780 Phaseolus vulgaris
Phvul.008G287100 1.0kb downstream 1.0kb downstream 1000 false Chr08: 62643781-62644780 Phaseolus vulgaris
Phvul.008G287100 2.0kb upstream 2.0kb upstream 8452 true Chr08: 62635329-62643780 Phaseolus vulgaris
Phvul.008G287100 2.0kb upstream 2.0kb upstream 2000 false Chr08: 62635329-62637328 Phaseolus vulgaris
Phvul.008G287100 2.0kb downstream 2.0kb downstream 8452 true Chr08: 62637329-62645780 Phaseolus vulgaris
Phvul.008G287100 2.0kb downstream 2.0kb downstream 2000 false Chr08: 62643781-62645780 Phaseolus vulgaris
Phvul.008G287100 5.0kb upstream 5.0kb upstream 11452 true Chr08: 62632329-62643780 Phaseolus vulgaris
Phvul.008G287100 5.0kb upstream 5.0kb upstream 5000 false Chr08: 62632329-62637328 Phaseolus vulgaris
Phvul.008G287100 5.0kb downstream 5.0kb downstream 11452 true Chr08: 62637329-62648780 Phaseolus vulgaris
Phvul.008G287100 5.0kb downstream 5.0kb downstream 5000 false Chr08: 62643781-62648780 Phaseolus vulgaris
Phvul.008G287100 10.0kb upstream 10.0kb upstream 16452 true Chr08: 62627329-62643780 Phaseolus vulgaris
Phvul.008G287100 10.0kb upstream 10.0kb upstream 10000 false Chr08: 62627329-62637328 Phaseolus vulgaris
Phvul.008G287100 10.0kb downstream 10.0kb downstream 16452 true Chr08: 62637329-62653780 Phaseolus vulgaris
Phvul.008G287100 10.0kb downstream 10.0kb downstream 10000 false Chr08: 62643781-62653780 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306692 5265 Fabidae View MSA
124062118 5270 Rosid View MSA
123738828 5271 Pentapetalae View MSA
122786921 5272 Eudicot View MSA
122043247 5273 Angiosperm View MSA
121310093 5274 Embryophyte View MSA
123347679 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.56648 0.0 13.9844   Low
cufflinks 9.86073 0.0 31.6386    
cufflinks 10.1204 0.0 28.3517    
cufflinks 8.43059 0.0 27.5933    
cufflinks 8.96412 0.0 28.9362    
cufflinks 11.0007 0.0 35.2109    
cufflinks 9.7678 0.0 31.1696    
cufflinks 10.2856 0.0 32.7575    
cufflinks 10.9996 0.0 35.036    
cufflinks 10.8333 0.0 34.5848    
cufflinks 7.82844 0.0 22.4475    

0 Strain