Gene : Phvul.008G288000 P. vulgaris v2.1
Defline:  (1 of 2) PTHR22811:SF50 - TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN P24BETA2 Genomic Order:  2898
Name:  ? Phvul.008G288000 Secondary Identifier:  ? PAC:37159511
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G288000 0.5kb upstream 0.5kb upstream 3084 true Chr08: 62697068-62700151 Phaseolus vulgaris
Phvul.008G288000 0.5kb upstream 0.5kb upstream 500 false Chr08: 62697068-62697567 Phaseolus vulgaris
Phvul.008G288000 0.5kb downstream 0.5kb downstream 3084 true Chr08: 62697568-62700651 Phaseolus vulgaris
Phvul.008G288000 0.5kb downstream 0.5kb downstream 500 false Chr08: 62700152-62700651 Phaseolus vulgaris
Phvul.008G288000 1.0kb upstream 1.0kb upstream 3584 true Chr08: 62696568-62700151 Phaseolus vulgaris
Phvul.008G288000 1.0kb upstream 1.0kb upstream 1000 false Chr08: 62696568-62697567 Phaseolus vulgaris
Phvul.008G288000 1.0kb downstream 1.0kb downstream 3584 true Chr08: 62697568-62701151 Phaseolus vulgaris
Phvul.008G288000 1.0kb downstream 1.0kb downstream 1000 false Chr08: 62700152-62701151 Phaseolus vulgaris
Phvul.008G288000 2.0kb upstream 2.0kb upstream 4584 true Chr08: 62695568-62700151 Phaseolus vulgaris
Phvul.008G288000 2.0kb upstream 2.0kb upstream 2000 false Chr08: 62695568-62697567 Phaseolus vulgaris
Phvul.008G288000 2.0kb downstream 2.0kb downstream 4584 true Chr08: 62697568-62702151 Phaseolus vulgaris
Phvul.008G288000 2.0kb downstream 2.0kb downstream 2000 false Chr08: 62700152-62702151 Phaseolus vulgaris
Phvul.008G288000 5.0kb upstream 5.0kb upstream 7584 true Chr08: 62692568-62700151 Phaseolus vulgaris
Phvul.008G288000 5.0kb upstream 5.0kb upstream 5000 false Chr08: 62692568-62697567 Phaseolus vulgaris
Phvul.008G288000 5.0kb downstream 5.0kb downstream 7584 true Chr08: 62697568-62705151 Phaseolus vulgaris
Phvul.008G288000 5.0kb downstream 5.0kb downstream 5000 false Chr08: 62700152-62705151 Phaseolus vulgaris
Phvul.008G288000 10.0kb upstream 10.0kb upstream 12584 true Chr08: 62687568-62700151 Phaseolus vulgaris
Phvul.008G288000 10.0kb upstream 10.0kb upstream 10000 false Chr08: 62687568-62697567 Phaseolus vulgaris
Phvul.008G288000 10.0kb downstream 10.0kb downstream 12584 true Chr08: 62697568-62710151 Phaseolus vulgaris
Phvul.008G288000 10.0kb downstream 10.0kb downstream 10000 false Chr08: 62700152-62710151 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304931 5265 Fabidae View MSA
124072381 5270 Rosid View MSA
123751948 5271 Pentapetalae View MSA
122788237 5272 Eudicot View MSA
122045343 5273 Angiosperm View MSA
121343966 5274 Embryophyte View MSA
123427292 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 69.3712 0.0 180.473 High High
cufflinks 55.9391 0.0 144.734 High  
cufflinks 25.8705 0.0 68.1032   Low
cufflinks 72.8166 0.0 189.416 High High
cufflinks 31.3742 0.0 81.9744    
cufflinks 28.3778 0.0 74.3164   Low
cufflinks 32.2799 0.0 84.0291 High  
cufflinks 46.5564 0.0 120.342 High  
cufflinks 48.4917 0.0 125.342 High  
cufflinks 32.1578 0.0 83.8076    
cufflinks 39.2832 0.0 101.808 High  

0 Strain