Gene : Phvul.008G288600 P. vulgaris v2.1
Defline:  (1 of 2) K12589 - exosome complex component RRP42 (RRP42, EXOSC7) Genomic Order:  2904
Name:  ? Phvul.008G288600 Secondary Identifier:  ? PAC:37159633
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G288600 0.5kb upstream 0.5kb upstream 3996 true Chr08: 62725023-62729018 Phaseolus vulgaris
Phvul.008G288600 0.5kb upstream 0.5kb upstream 500 false Chr08: 62725023-62725522 Phaseolus vulgaris
Phvul.008G288600 0.5kb downstream 0.5kb downstream 3996 true Chr08: 62725523-62729518 Phaseolus vulgaris
Phvul.008G288600 0.5kb downstream 0.5kb downstream 500 false Chr08: 62729019-62729518 Phaseolus vulgaris
Phvul.008G288600 1.0kb upstream 1.0kb upstream 4496 true Chr08: 62724523-62729018 Phaseolus vulgaris
Phvul.008G288600 1.0kb upstream 1.0kb upstream 1000 false Chr08: 62724523-62725522 Phaseolus vulgaris
Phvul.008G288600 1.0kb downstream 1.0kb downstream 4496 true Chr08: 62725523-62730018 Phaseolus vulgaris
Phvul.008G288600 1.0kb downstream 1.0kb downstream 1000 false Chr08: 62729019-62730018 Phaseolus vulgaris
Phvul.008G288600 2.0kb upstream 2.0kb upstream 5496 true Chr08: 62723523-62729018 Phaseolus vulgaris
Phvul.008G288600 2.0kb upstream 2.0kb upstream 2000 false Chr08: 62723523-62725522 Phaseolus vulgaris
Phvul.008G288600 2.0kb downstream 2.0kb downstream 5496 true Chr08: 62725523-62731018 Phaseolus vulgaris
Phvul.008G288600 2.0kb downstream 2.0kb downstream 2000 false Chr08: 62729019-62731018 Phaseolus vulgaris
Phvul.008G288600 5.0kb upstream 5.0kb upstream 8496 true Chr08: 62720523-62729018 Phaseolus vulgaris
Phvul.008G288600 5.0kb upstream 5.0kb upstream 5000 false Chr08: 62720523-62725522 Phaseolus vulgaris
Phvul.008G288600 5.0kb downstream 5.0kb downstream 8496 true Chr08: 62725523-62734018 Phaseolus vulgaris
Phvul.008G288600 5.0kb downstream 5.0kb downstream 5000 false Chr08: 62729019-62734018 Phaseolus vulgaris
Phvul.008G288600 10.0kb upstream 10.0kb upstream 13496 true Chr08: 62715523-62729018 Phaseolus vulgaris
Phvul.008G288600 10.0kb upstream 10.0kb upstream 10000 false Chr08: 62715523-62725522 Phaseolus vulgaris
Phvul.008G288600 10.0kb downstream 10.0kb downstream 13496 true Chr08: 62725523-62739018 Phaseolus vulgaris
Phvul.008G288600 10.0kb downstream 10.0kb downstream 10000 false Chr08: 62729019-62739018 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304830 5265 Fabidae View MSA
124064835 5270 Rosid View MSA
123739797 5271 Pentapetalae View MSA
122793133 5272 Eudicot View MSA
122044791 5273 Angiosperm View MSA
121345379 5274 Embryophyte View MSA
123428075 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.59015 0.0 25.6641   High
cufflinks 5.79288 0.0 22.4933    
cufflinks 3.78532 0.0 15.2079    
cufflinks 3.21681 0.0 13.7012    
cufflinks 2.52372 0.0 11.3095    
cufflinks 3.76508 0.0 14.988    
cufflinks 3.18521 0.0 13.5319    
cufflinks 3.89191 0.0 15.5489    
cufflinks 2.5537 0.0 11.4851    
cufflinks 8.45313 0.0 28.2915   High
cufflinks 2.2324 0.0 10.3888   Low

0 Strain