Gene : Phvul.008G288700 P. vulgaris v2.1
Defline:  (1 of 2) PTHR13994//PTHR13994:SF15 - NUDIX HYDROLASE RELATED // SUBFAMILY NOT NAMED Genomic Order:  2905
Name:  ? Phvul.008G288700 Secondary Identifier:  ? PAC:37160513
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5381 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G288700 0.5kb upstream 0.5kb upstream 3597 true Chr08: 62728790-62732386 Phaseolus vulgaris
Phvul.008G288700 0.5kb upstream 0.5kb upstream 500 false Chr08: 62728790-62729289 Phaseolus vulgaris
Phvul.008G288700 0.5kb downstream 0.5kb downstream 3597 true Chr08: 62729290-62732886 Phaseolus vulgaris
Phvul.008G288700 0.5kb downstream 0.5kb downstream 500 false Chr08: 62732387-62732886 Phaseolus vulgaris
Phvul.008G288700 1.0kb upstream 1.0kb upstream 4097 true Chr08: 62728290-62732386 Phaseolus vulgaris
Phvul.008G288700 1.0kb upstream 1.0kb upstream 1000 false Chr08: 62728290-62729289 Phaseolus vulgaris
Phvul.008G288700 1.0kb downstream 1.0kb downstream 4097 true Chr08: 62729290-62733386 Phaseolus vulgaris
Phvul.008G288700 1.0kb downstream 1.0kb downstream 1000 false Chr08: 62732387-62733386 Phaseolus vulgaris
Phvul.008G288700 2.0kb upstream 2.0kb upstream 5097 true Chr08: 62727290-62732386 Phaseolus vulgaris
Phvul.008G288700 2.0kb upstream 2.0kb upstream 2000 false Chr08: 62727290-62729289 Phaseolus vulgaris
Phvul.008G288700 2.0kb downstream 2.0kb downstream 5097 true Chr08: 62729290-62734386 Phaseolus vulgaris
Phvul.008G288700 2.0kb downstream 2.0kb downstream 2000 false Chr08: 62732387-62734386 Phaseolus vulgaris
Phvul.008G288700 5.0kb upstream 5.0kb upstream 8097 true Chr08: 62724290-62732386 Phaseolus vulgaris
Phvul.008G288700 5.0kb upstream 5.0kb upstream 5000 false Chr08: 62724290-62729289 Phaseolus vulgaris
Phvul.008G288700 5.0kb downstream 5.0kb downstream 8097 true Chr08: 62729290-62737386 Phaseolus vulgaris
Phvul.008G288700 5.0kb downstream 5.0kb downstream 5000 false Chr08: 62732387-62737386 Phaseolus vulgaris
Phvul.008G288700 10.0kb upstream 10.0kb upstream 13097 true Chr08: 62719290-62732386 Phaseolus vulgaris
Phvul.008G288700 10.0kb upstream 10.0kb upstream 10000 false Chr08: 62719290-62729289 Phaseolus vulgaris
Phvul.008G288700 10.0kb downstream 10.0kb downstream 13097 true Chr08: 62729290-62742386 Phaseolus vulgaris
Phvul.008G288700 10.0kb downstream 10.0kb downstream 10000 false Chr08: 62732387-62742386 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309473 5265 Fabidae View MSA
124071917 5270 Rosid View MSA
123746480 5271 Pentapetalae View MSA
122788941 5272 Eudicot View MSA
122049902 5273 Angiosperm View MSA
121347954 5274 Embryophyte View MSA
123428722 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.36293 0.0 13.263   High
cufflinks 1.17402 0.0 4.14208    
cufflinks 0.421228 0.0 1.61987 Low Low
cufflinks 0.390854 0.0 1.52653 Low Low
cufflinks 0.698581 0.0 2.60278    
cufflinks 0.355195 0.0 1.38688 Low Low
cufflinks 2.26751 0.0 7.43375    
cufflinks 3.52945 0.0 10.9686   High
cufflinks 1.2824 0.0 4.498    
cufflinks 1.53555 0.0 5.26904    
cufflinks 1.01635 0.0 3.65312    

0 Strain