Gene : Phvul.008G274200 P. vulgaris v2.1
Defline:  (1 of 6) PTHR23344:SF8 - GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE-LIKE PROTEIN-RELATED Genomic Order:  2755
Name:  ? Phvul.008G274200 Secondary Identifier:  ? PAC:37160927
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7409 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G274200 0.5kb upstream 0.5kb upstream 5737 true Chr08: 61791171-61796907 Phaseolus vulgaris
Phvul.008G274200 0.5kb upstream 0.5kb upstream 500 false Chr08: 61791171-61791670 Phaseolus vulgaris
Phvul.008G274200 0.5kb downstream 0.5kb downstream 5737 true Chr08: 61791671-61797407 Phaseolus vulgaris
Phvul.008G274200 0.5kb downstream 0.5kb downstream 500 false Chr08: 61796908-61797407 Phaseolus vulgaris
Phvul.008G274200 1.0kb upstream 1.0kb upstream 6237 true Chr08: 61790671-61796907 Phaseolus vulgaris
Phvul.008G274200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 61790671-61791670 Phaseolus vulgaris
Phvul.008G274200 1.0kb downstream 1.0kb downstream 6237 true Chr08: 61791671-61797907 Phaseolus vulgaris
Phvul.008G274200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 61796908-61797907 Phaseolus vulgaris
Phvul.008G274200 2.0kb upstream 2.0kb upstream 7237 true Chr08: 61789671-61796907 Phaseolus vulgaris
Phvul.008G274200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 61789671-61791670 Phaseolus vulgaris
Phvul.008G274200 2.0kb downstream 2.0kb downstream 7237 true Chr08: 61791671-61798907 Phaseolus vulgaris
Phvul.008G274200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 61796908-61798907 Phaseolus vulgaris
Phvul.008G274200 5.0kb upstream 5.0kb upstream 10237 true Chr08: 61786671-61796907 Phaseolus vulgaris
Phvul.008G274200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 61786671-61791670 Phaseolus vulgaris
Phvul.008G274200 5.0kb downstream 5.0kb downstream 10237 true Chr08: 61791671-61801907 Phaseolus vulgaris
Phvul.008G274200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 61796908-61801907 Phaseolus vulgaris
Phvul.008G274200 10.0kb upstream 10.0kb upstream 15237 true Chr08: 61781671-61796907 Phaseolus vulgaris
Phvul.008G274200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 61781671-61791670 Phaseolus vulgaris
Phvul.008G274200 10.0kb downstream 10.0kb downstream 15237 true Chr08: 61791671-61806907 Phaseolus vulgaris
Phvul.008G274200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 61796908-61806907 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303493 5265 Fabidae View MSA
124064633 5270 Rosid View MSA
123747170 5271 Pentapetalae View MSA
122796977 5272 Eudicot View MSA
122046858 5273 Angiosperm View MSA
121349950 5274 Embryophyte View MSA
123381513 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.17964 0.0 14.3216   Low
cufflinks 15.1108 0.0 39.1472    
cufflinks 39.4622 0.0 104.941 High High
cufflinks 20.5853 0.0 53.2147    
cufflinks 14.4455 0.0 37.495    
cufflinks 35.5411 0.0 93.5976 High High
cufflinks 18.3846 0.0 47.526    
cufflinks 12.9404 0.0 33.6182    
cufflinks 39.2666 0.0 103.763 High High
cufflinks 13.462 0.0 34.9795    
cufflinks 16.4264 0.0 42.5333    

0 Strain