Gene : Phvul.008G279400 P. vulgaris v2.1
Defline:  (1 of 1) K03500 - 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] (rsmB, sun) Genomic Order:  2812
Name:  ? Phvul.008G279400 Secondary Identifier:  ? PAC:37160512
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G279400 0.5kb upstream 0.5kb upstream 6306 true Chr08: 62081706-62088011 Phaseolus vulgaris
Phvul.008G279400 0.5kb upstream 0.5kb upstream 500 false Chr08: 62087512-62088011 Phaseolus vulgaris
Phvul.008G279400 0.5kb downstream 0.5kb downstream 6306 true Chr08: 62081206-62087511 Phaseolus vulgaris
Phvul.008G279400 0.5kb downstream 0.5kb downstream 500 false Chr08: 62081206-62081705 Phaseolus vulgaris
Phvul.008G279400 1.0kb upstream 1.0kb upstream 6806 true Chr08: 62081706-62088511 Phaseolus vulgaris
Phvul.008G279400 1.0kb upstream 1.0kb upstream 1000 false Chr08: 62087512-62088511 Phaseolus vulgaris
Phvul.008G279400 1.0kb downstream 1.0kb downstream 6806 true Chr08: 62080706-62087511 Phaseolus vulgaris
Phvul.008G279400 1.0kb downstream 1.0kb downstream 1000 false Chr08: 62080706-62081705 Phaseolus vulgaris
Phvul.008G279400 2.0kb upstream 2.0kb upstream 7806 true Chr08: 62081706-62089511 Phaseolus vulgaris
Phvul.008G279400 2.0kb upstream 2.0kb upstream 2000 false Chr08: 62087512-62089511 Phaseolus vulgaris
Phvul.008G279400 2.0kb downstream 2.0kb downstream 7806 true Chr08: 62079706-62087511 Phaseolus vulgaris
Phvul.008G279400 2.0kb downstream 2.0kb downstream 2000 false Chr08: 62079706-62081705 Phaseolus vulgaris
Phvul.008G279400 5.0kb upstream 5.0kb upstream 10806 true Chr08: 62081706-62092511 Phaseolus vulgaris
Phvul.008G279400 5.0kb upstream 5.0kb upstream 5000 false Chr08: 62087512-62092511 Phaseolus vulgaris
Phvul.008G279400 5.0kb downstream 5.0kb downstream 10806 true Chr08: 62076706-62087511 Phaseolus vulgaris
Phvul.008G279400 5.0kb downstream 5.0kb downstream 5000 false Chr08: 62076706-62081705 Phaseolus vulgaris
Phvul.008G279400 10.0kb upstream 10.0kb upstream 15806 true Chr08: 62081706-62097511 Phaseolus vulgaris
Phvul.008G279400 10.0kb upstream 10.0kb upstream 10000 false Chr08: 62087512-62097511 Phaseolus vulgaris
Phvul.008G279400 10.0kb downstream 10.0kb downstream 15806 true Chr08: 62071706-62087511 Phaseolus vulgaris
Phvul.008G279400 10.0kb downstream 10.0kb downstream 10000 false Chr08: 62071706-62081705 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306410 5265 Fabidae View MSA
124073549 5270 Rosid View MSA
123740047 5271 Pentapetalae View MSA
122787436 5272 Eudicot View MSA
122043907 5273 Angiosperm View MSA
121346553 5274 Embryophyte View MSA
123427921 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.11272 0.0 11.7649    
cufflinks 3.41453 0.0 9.96351    
cufflinks 13.6089 0.0 35.4428   High
cufflinks 2.89405 0.0 8.65863    
cufflinks 2.33897 0.0 7.17164    
cufflinks 10.8058 0.0 28.4867   High
cufflinks 1.56128 0.0 4.97408   Low
cufflinks 2.17431 0.0 6.66024    
cufflinks 1.2509 0.0 4.09869   Low
cufflinks 5.24686 0.0 14.6966    
cufflinks 2.0678 0.0 6.41982    

0 Strain