Gene : Phvul.008G277600 P. vulgaris v2.1
Defline:  (1 of 29) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  2793
Name:  ? Phvul.008G277600 Secondary Identifier:  ? PAC:37158703
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G277600 0.5kb upstream 0.5kb upstream 4219 true Chr08: 62000775-62004993 Phaseolus vulgaris
Phvul.008G277600 0.5kb upstream 0.5kb upstream 500 false Chr08: 62004494-62004993 Phaseolus vulgaris
Phvul.008G277600 0.5kb downstream 0.5kb downstream 4219 true Chr08: 62000275-62004493 Phaseolus vulgaris
Phvul.008G277600 0.5kb downstream 0.5kb downstream 500 false Chr08: 62000275-62000774 Phaseolus vulgaris
Phvul.008G277600 1.0kb upstream 1.0kb upstream 4719 true Chr08: 62000775-62005493 Phaseolus vulgaris
Phvul.008G277600 1.0kb upstream 1.0kb upstream 1000 false Chr08: 62004494-62005493 Phaseolus vulgaris
Phvul.008G277600 1.0kb downstream 1.0kb downstream 4719 true Chr08: 61999775-62004493 Phaseolus vulgaris
Phvul.008G277600 1.0kb downstream 1.0kb downstream 1000 false Chr08: 61999775-62000774 Phaseolus vulgaris
Phvul.008G277600 2.0kb upstream 2.0kb upstream 5719 true Chr08: 62000775-62006493 Phaseolus vulgaris
Phvul.008G277600 2.0kb upstream 2.0kb upstream 2000 false Chr08: 62004494-62006493 Phaseolus vulgaris
Phvul.008G277600 2.0kb downstream 2.0kb downstream 5719 true Chr08: 61998775-62004493 Phaseolus vulgaris
Phvul.008G277600 2.0kb downstream 2.0kb downstream 2000 false Chr08: 61998775-62000774 Phaseolus vulgaris
Phvul.008G277600 5.0kb upstream 5.0kb upstream 8719 true Chr08: 62000775-62009493 Phaseolus vulgaris
Phvul.008G277600 5.0kb upstream 5.0kb upstream 5000 false Chr08: 62004494-62009493 Phaseolus vulgaris
Phvul.008G277600 5.0kb downstream 5.0kb downstream 8719 true Chr08: 61995775-62004493 Phaseolus vulgaris
Phvul.008G277600 5.0kb downstream 5.0kb downstream 5000 false Chr08: 61995775-62000774 Phaseolus vulgaris
Phvul.008G277600 10.0kb upstream 10.0kb upstream 13719 true Chr08: 62000775-62014493 Phaseolus vulgaris
Phvul.008G277600 10.0kb upstream 10.0kb upstream 10000 false Chr08: 62004494-62014493 Phaseolus vulgaris
Phvul.008G277600 10.0kb downstream 10.0kb downstream 13719 true Chr08: 61990775-62004493 Phaseolus vulgaris
Phvul.008G277600 10.0kb downstream 10.0kb downstream 10000 false Chr08: 61990775-62000774 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302112 5265 Fabidae View MSA
124068825 5270 Rosid View MSA
123736468 5271 Pentapetalae View MSA
122787025 5272 Eudicot View MSA
122042185 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.281987 0.0 1.03669 Low Low
cufflinks 0.597764 0.0 2.04483    
cufflinks 0.429831 0.0 1.51772 Low  
cufflinks 0.462853 0.0 1.6475 Low  
cufflinks 0.281396 0.0 1.04233 Low Low
cufflinks 0.626229 0.0 2.12906    
cufflinks 0.584748 0.0 2.00604    
cufflinks 0.870037 0.0 2.8339   High
cufflinks 0.683002 0.0 2.31286    
cufflinks 0.38382 0.0 1.37557    
cufflinks 0.258263 0.0 0.963289 Low Low

0 Strain