Gene : Phvul.L001648 P. vulgaris v2.1
Defline:  (1 of 1) K13156 - U11/U12 small nuclear ribonucleoprotein 48 kDa protein (SNRNP48) Genomic Order:  1
Name:  ? Phvul.L001648 Secondary Identifier:  ? PAC:37148442
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.L001648 0.5kb upstream 0.5kb upstream 5624 true scaffold_19: 230969-236592 Phaseolus vulgaris
Phvul.L001648 0.5kb upstream 0.5kb upstream 500 false scaffold_19: 230969-231468 Phaseolus vulgaris
Phvul.L001648 0.5kb downstream 0.5kb downstream 5624 true scaffold_19: 231469-237092 Phaseolus vulgaris
Phvul.L001648 0.5kb downstream 0.5kb downstream 500 false scaffold_19: 236593-237092 Phaseolus vulgaris
Phvul.L001648 1.0kb upstream 1.0kb upstream 6124 true scaffold_19: 230469-236592 Phaseolus vulgaris
Phvul.L001648 1.0kb upstream 1.0kb upstream 1000 false scaffold_19: 230469-231468 Phaseolus vulgaris
Phvul.L001648 1.0kb downstream 1.0kb downstream 6124 true scaffold_19: 231469-237592 Phaseolus vulgaris
Phvul.L001648 1.0kb downstream 1.0kb downstream 1000 false scaffold_19: 236593-237592 Phaseolus vulgaris
Phvul.L001648 2.0kb upstream 2.0kb upstream 7124 true scaffold_19: 229469-236592 Phaseolus vulgaris
Phvul.L001648 2.0kb upstream 2.0kb upstream 2000 false scaffold_19: 229469-231468 Phaseolus vulgaris
Phvul.L001648 2.0kb downstream 2.0kb downstream 7124 true scaffold_19: 231469-238592 Phaseolus vulgaris
Phvul.L001648 2.0kb downstream 2.0kb downstream 2000 false scaffold_19: 236593-238592 Phaseolus vulgaris
Phvul.L001648 5.0kb upstream 5.0kb upstream 10124 true scaffold_19: 226469-236592 Phaseolus vulgaris
Phvul.L001648 5.0kb upstream 5.0kb upstream 5000 false scaffold_19: 226469-231468 Phaseolus vulgaris
Phvul.L001648 5.0kb downstream 5.0kb downstream 10124 true scaffold_19: 231469-241592 Phaseolus vulgaris
Phvul.L001648 5.0kb downstream 5.0kb downstream 5000 false scaffold_19: 236593-241592 Phaseolus vulgaris
Phvul.L001648 10.0kb upstream 10.0kb upstream 15124 true scaffold_19: 221469-236592 Phaseolus vulgaris
Phvul.L001648 10.0kb upstream 10.0kb upstream 10000 false scaffold_19: 221469-231468 Phaseolus vulgaris
Phvul.L001648 10.0kb downstream 10.0kb downstream 15124 true scaffold_19: 231469-246592 Phaseolus vulgaris
Phvul.L001648 10.0kb downstream 10.0kb downstream 10000 false scaffold_19: 236593-246592 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302931 5265 Fabidae View MSA
124063423 5270 Rosid View MSA
123740826 5271 Pentapetalae View MSA
122788385 5272 Eudicot View MSA
122044714 5273 Angiosperm View MSA
121344837 5274 Embryophyte View MSA
123380110 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.41534 0.0 12.5959   Low
cufflinks 5.06847 0.0 19.2669    
cufflinks 9.28396 0.0 32.1339    
cufflinks 3.15211 0.0 13.5674   Low
cufflinks 7.18947 0.0 25.7614    
cufflinks 9.70341 0.0 32.9483    
cufflinks 9.35875 0.0 34.6662    
cufflinks 8.85198 0.0 33.3122    
cufflinks 7.9787 0.0 27.7915    
cufflinks 6.68158 0.0 24.2737    
cufflinks 5.61933 0.0 21.1613    

0 Strain