Gene : Phvul.011G017600 P. vulgaris v2.1
Defline:  (1 of 197) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  178
Name:  ? Phvul.011G017600 Secondary Identifier:  ? PAC:37156075
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G017600 0.5kb upstream 0.5kb upstream 9338 true Chr11: 1381277-1390614 Phaseolus vulgaris
Phvul.011G017600 0.5kb upstream 0.5kb upstream 500 false Chr11: 1390115-1390614 Phaseolus vulgaris
Phvul.011G017600 0.5kb downstream 0.5kb downstream 9338 true Chr11: 1380777-1390114 Phaseolus vulgaris
Phvul.011G017600 0.5kb downstream 0.5kb downstream 500 false Chr11: 1380777-1381276 Phaseolus vulgaris
Phvul.011G017600 1.0kb upstream 1.0kb upstream 9838 true Chr11: 1381277-1391114 Phaseolus vulgaris
Phvul.011G017600 1.0kb upstream 1.0kb upstream 1000 false Chr11: 1390115-1391114 Phaseolus vulgaris
Phvul.011G017600 1.0kb downstream 1.0kb downstream 9838 true Chr11: 1380277-1390114 Phaseolus vulgaris
Phvul.011G017600 1.0kb downstream 1.0kb downstream 1000 false Chr11: 1380277-1381276 Phaseolus vulgaris
Phvul.011G017600 2.0kb upstream 2.0kb upstream 10838 true Chr11: 1381277-1392114 Phaseolus vulgaris
Phvul.011G017600 2.0kb upstream 2.0kb upstream 2000 false Chr11: 1390115-1392114 Phaseolus vulgaris
Phvul.011G017600 2.0kb downstream 2.0kb downstream 10838 true Chr11: 1379277-1390114 Phaseolus vulgaris
Phvul.011G017600 2.0kb downstream 2.0kb downstream 2000 false Chr11: 1379277-1381276 Phaseolus vulgaris
Phvul.011G017600 5.0kb upstream 5.0kb upstream 13838 true Chr11: 1381277-1395114 Phaseolus vulgaris
Phvul.011G017600 5.0kb upstream 5.0kb upstream 5000 false Chr11: 1390115-1395114 Phaseolus vulgaris
Phvul.011G017600 5.0kb downstream 5.0kb downstream 13838 true Chr11: 1376277-1390114 Phaseolus vulgaris
Phvul.011G017600 5.0kb downstream 5.0kb downstream 5000 false Chr11: 1376277-1381276 Phaseolus vulgaris
Phvul.011G017600 10.0kb upstream 10.0kb upstream 18838 true Chr11: 1381277-1400114 Phaseolus vulgaris
Phvul.011G017600 10.0kb upstream 10.0kb upstream 10000 false Chr11: 1390115-1400114 Phaseolus vulgaris
Phvul.011G017600 10.0kb downstream 10.0kb downstream 18838 true Chr11: 1371277-1390114 Phaseolus vulgaris
Phvul.011G017600 10.0kb downstream 10.0kb downstream 10000 false Chr11: 1371277-1381276 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309980 5265 Fabidae View MSA
124060675 5270 Rosid View MSA
123748612 5271 Pentapetalae View MSA
122791093 5272 Eudicot View MSA
122046985 5273 Angiosperm View MSA
121347235 5274 Embryophyte View MSA
123380515 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.80213 0.0 10.5595    
cufflinks 4.23695 0.0 11.6743    
cufflinks 21.9871 0.0 57.3497   High
cufflinks 1.73331 0.0 5.30101   Low
cufflinks 2.77913 0.0 8.05852    
cufflinks 17.2481 0.0 44.6603   High
cufflinks 2.83825 0.0 8.10019    
cufflinks 2.21832 0.0 6.46264    
cufflinks 1.98225 0.0 5.89465    
cufflinks 5.17752 0.0 14.0408    
cufflinks 2.55541 0.0 7.43823    

0 Strain