Gene : Phvul.011G020800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11946//PTHR11946:SF78 - ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES // SUBFAMILY NOT NAMED Genomic Order:  210
Name:  ? Phvul.011G020800 Secondary Identifier:  ? PAC:37155507
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRNA-CHARGING-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G020800 0.5kb upstream 0.5kb upstream 7668 true Chr11: 1625177-1632844 Phaseolus vulgaris
Phvul.011G020800 0.5kb upstream 0.5kb upstream 500 false Chr11: 1625177-1625676 Phaseolus vulgaris
Phvul.011G020800 0.5kb downstream 0.5kb downstream 7668 true Chr11: 1625677-1633344 Phaseolus vulgaris
Phvul.011G020800 0.5kb downstream 0.5kb downstream 500 false Chr11: 1632845-1633344 Phaseolus vulgaris
Phvul.011G020800 1.0kb upstream 1.0kb upstream 8168 true Chr11: 1624677-1632844 Phaseolus vulgaris
Phvul.011G020800 1.0kb upstream 1.0kb upstream 1000 false Chr11: 1624677-1625676 Phaseolus vulgaris
Phvul.011G020800 1.0kb downstream 1.0kb downstream 8168 true Chr11: 1625677-1633844 Phaseolus vulgaris
Phvul.011G020800 1.0kb downstream 1.0kb downstream 1000 false Chr11: 1632845-1633844 Phaseolus vulgaris
Phvul.011G020800 2.0kb upstream 2.0kb upstream 9168 true Chr11: 1623677-1632844 Phaseolus vulgaris
Phvul.011G020800 2.0kb upstream 2.0kb upstream 2000 false Chr11: 1623677-1625676 Phaseolus vulgaris
Phvul.011G020800 2.0kb downstream 2.0kb downstream 9168 true Chr11: 1625677-1634844 Phaseolus vulgaris
Phvul.011G020800 2.0kb downstream 2.0kb downstream 2000 false Chr11: 1632845-1634844 Phaseolus vulgaris
Phvul.011G020800 5.0kb upstream 5.0kb upstream 12168 true Chr11: 1620677-1632844 Phaseolus vulgaris
Phvul.011G020800 5.0kb upstream 5.0kb upstream 5000 false Chr11: 1620677-1625676 Phaseolus vulgaris
Phvul.011G020800 5.0kb downstream 5.0kb downstream 12168 true Chr11: 1625677-1637844 Phaseolus vulgaris
Phvul.011G020800 5.0kb downstream 5.0kb downstream 5000 false Chr11: 1632845-1637844 Phaseolus vulgaris
Phvul.011G020800 10.0kb upstream 10.0kb upstream 17168 true Chr11: 1615677-1632844 Phaseolus vulgaris
Phvul.011G020800 10.0kb upstream 10.0kb upstream 10000 false Chr11: 1615677-1625676 Phaseolus vulgaris
Phvul.011G020800 10.0kb downstream 10.0kb downstream 17168 true Chr11: 1625677-1642844 Phaseolus vulgaris
Phvul.011G020800 10.0kb downstream 10.0kb downstream 10000 false Chr11: 1632845-1642844 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300512 5265 Fabidae View MSA
124066402 5270 Rosid View MSA
123739463 5271 Pentapetalae View MSA
122793532 5272 Eudicot View MSA
122041539 5273 Angiosperm View MSA
121348816 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.768 0.0 20.497   Low
cufflinks 15.6369 0.0 40.4184    
cufflinks 17.8818 0.0 46.2736    
cufflinks 7.17797 0.0 19.1728   Low
cufflinks 14.012 0.0 36.2581    
cufflinks 18.9916 0.0 49.1781    
cufflinks 21.9315 0.0 57.0095    
cufflinks 27.3041 0.0 71.8428   High
cufflinks 25.9748 0.0 67.9203   High
cufflinks 18.1654 0.0 46.9973    
cufflinks 14.4568 0.0 37.3927    

0 Strain