Gene : Phvul.011G009700 P. vulgaris v2.1
Defline:  (1 of 1) PTHR34940:SF1 - PHOTOSYSTEM II 5 KDA PROTEIN, CHLOROPLASTIC Genomic Order:  98
Name:  ? Phvul.011G009700 Secondary Identifier:  ? PAC:37156370
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G009700 0.5kb upstream 0.5kb upstream 821 true Chr11: 726496-727316 Phaseolus vulgaris
Phvul.011G009700 0.5kb upstream 0.5kb upstream 500 false Chr11: 726817-727316 Phaseolus vulgaris
Phvul.011G009700 0.5kb downstream 0.5kb downstream 821 true Chr11: 725996-726816 Phaseolus vulgaris
Phvul.011G009700 0.5kb downstream 0.5kb downstream 500 false Chr11: 725996-726495 Phaseolus vulgaris
Phvul.011G009700 1.0kb upstream 1.0kb upstream 1321 true Chr11: 726496-727816 Phaseolus vulgaris
Phvul.011G009700 1.0kb upstream 1.0kb upstream 1000 false Chr11: 726817-727816 Phaseolus vulgaris
Phvul.011G009700 1.0kb downstream 1.0kb downstream 1321 true Chr11: 725496-726816 Phaseolus vulgaris
Phvul.011G009700 1.0kb downstream 1.0kb downstream 1000 false Chr11: 725496-726495 Phaseolus vulgaris
Phvul.011G009700 2.0kb upstream 2.0kb upstream 2321 true Chr11: 726496-728816 Phaseolus vulgaris
Phvul.011G009700 2.0kb upstream 2.0kb upstream 2000 false Chr11: 726817-728816 Phaseolus vulgaris
Phvul.011G009700 2.0kb downstream 2.0kb downstream 2321 true Chr11: 724496-726816 Phaseolus vulgaris
Phvul.011G009700 2.0kb downstream 2.0kb downstream 2000 false Chr11: 724496-726495 Phaseolus vulgaris
Phvul.011G009700 5.0kb upstream 5.0kb upstream 5321 true Chr11: 726496-731816 Phaseolus vulgaris
Phvul.011G009700 5.0kb upstream 5.0kb upstream 5000 false Chr11: 726817-731816 Phaseolus vulgaris
Phvul.011G009700 5.0kb downstream 5.0kb downstream 5321 true Chr11: 721496-726816 Phaseolus vulgaris
Phvul.011G009700 5.0kb downstream 5.0kb downstream 5000 false Chr11: 721496-726495 Phaseolus vulgaris
Phvul.011G009700 10.0kb upstream 10.0kb upstream 10321 true Chr11: 726496-736816 Phaseolus vulgaris
Phvul.011G009700 10.0kb upstream 10.0kb upstream 10000 false Chr11: 726817-736816 Phaseolus vulgaris
Phvul.011G009700 10.0kb downstream 10.0kb downstream 10321 true Chr11: 716496-726816 Phaseolus vulgaris
Phvul.011G009700 10.0kb downstream 10.0kb downstream 10000 false Chr11: 716496-726495 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305386 5265 Fabidae View MSA
124063108 5270 Rosid View MSA
123738637 5271 Pentapetalae View MSA
122793683 5272 Eudicot View MSA
122046745 5273 Angiosperm View MSA
121349271 5274 Embryophyte View MSA
123427633 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 108.009 0.0 296.576 High  
cufflinks 303.947 0.0 787.023 High  
cufflinks 3362.0 0.0 10689.2 High High
cufflinks 143.807 0.0 383.511 High  
cufflinks 260.987 0.0 677.354 High  
cufflinks 1052.53 0.0 2858.25 High  
cufflinks 0.295729 0.0 1.44834 Low Low
cufflinks 0.932249 0.0 4.08202   Low
cufflinks 0.605394 0.0 2.73546   Low
cufflinks 90.8113 0.0 255.181 High  
cufflinks 151.815 0.0 405.88 High  

0 Strain