Gene : Phvul.011G001300 P. vulgaris v2.1
Defline:  (1 of 197) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  13
Name:  ? Phvul.011G001300 Secondary Identifier:  ? PAC:37156652
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G001300 0.5kb upstream 0.5kb upstream 2408 true Chr11: 108907-111314 Phaseolus vulgaris
Phvul.011G001300 0.5kb upstream 0.5kb upstream 500 false Chr11: 108907-109406 Phaseolus vulgaris
Phvul.011G001300 0.5kb downstream 0.5kb downstream 2408 true Chr11: 109407-111814 Phaseolus vulgaris
Phvul.011G001300 0.5kb downstream 0.5kb downstream 500 false Chr11: 111315-111814 Phaseolus vulgaris
Phvul.011G001300 1.0kb upstream 1.0kb upstream 2908 true Chr11: 108407-111314 Phaseolus vulgaris
Phvul.011G001300 1.0kb upstream 1.0kb upstream 1000 false Chr11: 108407-109406 Phaseolus vulgaris
Phvul.011G001300 1.0kb downstream 1.0kb downstream 2908 true Chr11: 109407-112314 Phaseolus vulgaris
Phvul.011G001300 1.0kb downstream 1.0kb downstream 1000 false Chr11: 111315-112314 Phaseolus vulgaris
Phvul.011G001300 2.0kb upstream 2.0kb upstream 3908 true Chr11: 107407-111314 Phaseolus vulgaris
Phvul.011G001300 2.0kb upstream 2.0kb upstream 2000 false Chr11: 107407-109406 Phaseolus vulgaris
Phvul.011G001300 2.0kb downstream 2.0kb downstream 3908 true Chr11: 109407-113314 Phaseolus vulgaris
Phvul.011G001300 2.0kb downstream 2.0kb downstream 2000 false Chr11: 111315-113314 Phaseolus vulgaris
Phvul.011G001300 5.0kb upstream 5.0kb upstream 6908 true Chr11: 104407-111314 Phaseolus vulgaris
Phvul.011G001300 5.0kb upstream 5.0kb upstream 5000 false Chr11: 104407-109406 Phaseolus vulgaris
Phvul.011G001300 5.0kb downstream 5.0kb downstream 6908 true Chr11: 109407-116314 Phaseolus vulgaris
Phvul.011G001300 5.0kb downstream 5.0kb downstream 5000 false Chr11: 111315-116314 Phaseolus vulgaris
Phvul.011G001300 10.0kb upstream 10.0kb upstream 11908 true Chr11: 99407-111314 Phaseolus vulgaris
Phvul.011G001300 10.0kb upstream 10.0kb upstream 10000 false Chr11: 99407-109406 Phaseolus vulgaris
Phvul.011G001300 10.0kb downstream 10.0kb downstream 11908 true Chr11: 109407-121314 Phaseolus vulgaris
Phvul.011G001300 10.0kb downstream 10.0kb downstream 10000 false Chr11: 111315-121314 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302359 5265 Fabidae View MSA
124066946 5270 Rosid View MSA
123748514 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.30633 0.0 14.9946   High
cufflinks 3.96294 0.0 11.569    
cufflinks 3.41936 0.0 10.127    
cufflinks 6.34753 0.0 17.8349   High
cufflinks 3.93272 0.0 11.5417    
cufflinks 2.85903 0.0 8.65813    
cufflinks 2.64995 0.0 8.09582    
cufflinks 2.73026 0.0 8.29001    
cufflinks 2.2518 0.0 7.04189   Low
cufflinks 3.04549 0.0 9.16909    
cufflinks 3.20447 0.0 9.61707    

0 Strain