Gene : Phvul.011G006500 P. vulgaris v2.1
Defline:  (1 of 1) K08343 - ubiquitin-like-conjugating enzyme ATG3 (ATG3) Genomic Order:  65
Name:  ? Phvul.011G006500 Secondary Identifier:  ? PAC:37156041
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G006500 0.5kb upstream 0.5kb upstream 5113 true Chr11: 472354-477466 Phaseolus vulgaris
Phvul.011G006500 0.5kb upstream 0.5kb upstream 500 false Chr11: 472354-472853 Phaseolus vulgaris
Phvul.011G006500 0.5kb downstream 0.5kb downstream 5113 true Chr11: 472854-477966 Phaseolus vulgaris
Phvul.011G006500 0.5kb downstream 0.5kb downstream 500 false Chr11: 477467-477966 Phaseolus vulgaris
Phvul.011G006500 1.0kb upstream 1.0kb upstream 5613 true Chr11: 471854-477466 Phaseolus vulgaris
Phvul.011G006500 1.0kb upstream 1.0kb upstream 1000 false Chr11: 471854-472853 Phaseolus vulgaris
Phvul.011G006500 1.0kb downstream 1.0kb downstream 5613 true Chr11: 472854-478466 Phaseolus vulgaris
Phvul.011G006500 1.0kb downstream 1.0kb downstream 1000 false Chr11: 477467-478466 Phaseolus vulgaris
Phvul.011G006500 2.0kb upstream 2.0kb upstream 6613 true Chr11: 470854-477466 Phaseolus vulgaris
Phvul.011G006500 2.0kb upstream 2.0kb upstream 2000 false Chr11: 470854-472853 Phaseolus vulgaris
Phvul.011G006500 2.0kb downstream 2.0kb downstream 6613 true Chr11: 472854-479466 Phaseolus vulgaris
Phvul.011G006500 2.0kb downstream 2.0kb downstream 2000 false Chr11: 477467-479466 Phaseolus vulgaris
Phvul.011G006500 5.0kb upstream 5.0kb upstream 9613 true Chr11: 467854-477466 Phaseolus vulgaris
Phvul.011G006500 5.0kb upstream 5.0kb upstream 5000 false Chr11: 467854-472853 Phaseolus vulgaris
Phvul.011G006500 5.0kb downstream 5.0kb downstream 9613 true Chr11: 472854-482466 Phaseolus vulgaris
Phvul.011G006500 5.0kb downstream 5.0kb downstream 5000 false Chr11: 477467-482466 Phaseolus vulgaris
Phvul.011G006500 10.0kb upstream 10.0kb upstream 14613 true Chr11: 462854-477466 Phaseolus vulgaris
Phvul.011G006500 10.0kb upstream 10.0kb upstream 10000 false Chr11: 462854-472853 Phaseolus vulgaris
Phvul.011G006500 10.0kb downstream 10.0kb downstream 14613 true Chr11: 472854-487466 Phaseolus vulgaris
Phvul.011G006500 10.0kb downstream 10.0kb downstream 10000 false Chr11: 477467-487466 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299719 5265 Fabidae View MSA
124064028 5270 Rosid View MSA
123743996 5271 Pentapetalae View MSA
122789041 5272 Eudicot View MSA
122041877 5273 Angiosperm View MSA
121349462 5274 Embryophyte View MSA
123426307 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 59.9918 0.0 197.009 High High
cufflinks 31.5047 0.0 99.9735    
cufflinks 30.1002 0.0 95.7557    
cufflinks 23.3809 0.0 75.3652   Low
cufflinks 26.2357 0.0 84.0833    
cufflinks 25.1934 0.0 80.6473    
cufflinks 27.3155 0.0 87.0205    
cufflinks 25.1425 0.0 80.3612    
cufflinks 37.1228 0.0 117.705 High  
cufflinks 41.9201 0.0 133.209 High High
cufflinks 27.83 0.0 88.7998    

0 Strain