Gene : Phvul.L001693 P. vulgaris v2.1
Defline:  (1 of 11) KOG2722 - Predicted membrane protein Genomic Order:  1
Name:  ? Phvul.L001693 Secondary Identifier:  ? PAC:37167660
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.L001693 0.5kb upstream 0.5kb upstream 3405 true scaffold_96: 85560-88964 Phaseolus vulgaris
Phvul.L001693 0.5kb upstream 0.5kb upstream 500 false scaffold_96: 88465-88964 Phaseolus vulgaris
Phvul.L001693 0.5kb downstream 0.5kb downstream 3405 true scaffold_96: 85060-88464 Phaseolus vulgaris
Phvul.L001693 0.5kb downstream 0.5kb downstream 500 false scaffold_96: 85060-85559 Phaseolus vulgaris
Phvul.L001693 1.0kb upstream 1.0kb upstream 3905 true scaffold_96: 85560-89464 Phaseolus vulgaris
Phvul.L001693 1.0kb upstream 1.0kb upstream 1000 false scaffold_96: 88465-89464 Phaseolus vulgaris
Phvul.L001693 1.0kb downstream 1.0kb downstream 3905 true scaffold_96: 84560-88464 Phaseolus vulgaris
Phvul.L001693 1.0kb downstream 1.0kb downstream 1000 false scaffold_96: 84560-85559 Phaseolus vulgaris
Phvul.L001693 2.0kb upstream 2.0kb upstream 4905 true scaffold_96: 85560-90464 Phaseolus vulgaris
Phvul.L001693 2.0kb upstream 2.0kb upstream 2000 false scaffold_96: 88465-90464 Phaseolus vulgaris
Phvul.L001693 2.0kb downstream 2.0kb downstream 4905 true scaffold_96: 83560-88464 Phaseolus vulgaris
Phvul.L001693 2.0kb downstream 2.0kb downstream 2000 false scaffold_96: 83560-85559 Phaseolus vulgaris
Phvul.L001693 5.0kb upstream 5.0kb upstream 7905 true scaffold_96: 85560-93464 Phaseolus vulgaris
Phvul.L001693 5.0kb upstream 5.0kb upstream 5000 false scaffold_96: 88465-93464 Phaseolus vulgaris
Phvul.L001693 5.0kb downstream 5.0kb downstream 7905 true scaffold_96: 80560-88464 Phaseolus vulgaris
Phvul.L001693 5.0kb downstream 5.0kb downstream 5000 false scaffold_96: 80560-85559 Phaseolus vulgaris
Phvul.L001693 10.0kb upstream 10.0kb upstream 12407 true scaffold_96: 85560-97966 Phaseolus vulgaris
Phvul.L001693 10.0kb upstream 10.0kb upstream 9502 false scaffold_96: 88465-97966 Phaseolus vulgaris
Phvul.L001693 10.0kb downstream 10.0kb downstream 12905 true scaffold_96: 75560-88464 Phaseolus vulgaris
Phvul.L001693 10.0kb downstream 10.0kb downstream 10000 false scaffold_96: 75560-85559 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026446 5273 Angiosperm View MSA
122255132 5265 Fabidae View MSA
124070797 5270 Rosid View MSA
123751038 5271 Pentapetalae View MSA
122794652 5272 Eudicot View MSA
123429004 5275 Viridiplantae View MSA
121349316 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0151743 0.0 0.0815513 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0259731 0.0 0.13083 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.784927 0.0 2.91678    
cufflinks 0.0196294 0.0 0.102367 Low Low
cufflinks 0.421039 0.0 1.6394 Low  
cufflinks 2.83209 0.0 9.11386   High
cufflinks 0.253163 0.0 1.02803 Low  
cufflinks 0.174855 0.0 0.728599 Low  
cufflinks 0.510084 0.0 1.95969 Low  

0 Strain