Gene : Phvul.011G073500 P. vulgaris v2.1
Defline:  (1 of 1) 1.3.99.12 - 2-methylacyl-CoA dehydrogenase / Branched-chain acyl-CoA dehydrogenase Genomic Order:  756
Name:  ? Phvul.011G073500 Secondary Identifier:  ? PAC:37157023
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris LEU-DEG2-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G073500 0.5kb upstream 0.5kb upstream 7707 true Chr11: 6787201-6794907 Phaseolus vulgaris
Phvul.011G073500 0.5kb upstream 0.5kb upstream 500 false Chr11: 6787201-6787700 Phaseolus vulgaris
Phvul.011G073500 0.5kb downstream 0.5kb downstream 7707 true Chr11: 6787701-6795407 Phaseolus vulgaris
Phvul.011G073500 0.5kb downstream 0.5kb downstream 500 false Chr11: 6794908-6795407 Phaseolus vulgaris
Phvul.011G073500 1.0kb upstream 1.0kb upstream 8207 true Chr11: 6786701-6794907 Phaseolus vulgaris
Phvul.011G073500 1.0kb upstream 1.0kb upstream 1000 false Chr11: 6786701-6787700 Phaseolus vulgaris
Phvul.011G073500 1.0kb downstream 1.0kb downstream 8207 true Chr11: 6787701-6795907 Phaseolus vulgaris
Phvul.011G073500 1.0kb downstream 1.0kb downstream 1000 false Chr11: 6794908-6795907 Phaseolus vulgaris
Phvul.011G073500 2.0kb upstream 2.0kb upstream 9207 true Chr11: 6785701-6794907 Phaseolus vulgaris
Phvul.011G073500 2.0kb upstream 2.0kb upstream 2000 false Chr11: 6785701-6787700 Phaseolus vulgaris
Phvul.011G073500 2.0kb downstream 2.0kb downstream 9207 true Chr11: 6787701-6796907 Phaseolus vulgaris
Phvul.011G073500 2.0kb downstream 2.0kb downstream 2000 false Chr11: 6794908-6796907 Phaseolus vulgaris
Phvul.011G073500 5.0kb upstream 5.0kb upstream 12207 true Chr11: 6782701-6794907 Phaseolus vulgaris
Phvul.011G073500 5.0kb upstream 5.0kb upstream 5000 false Chr11: 6782701-6787700 Phaseolus vulgaris
Phvul.011G073500 5.0kb downstream 5.0kb downstream 12207 true Chr11: 6787701-6799907 Phaseolus vulgaris
Phvul.011G073500 5.0kb downstream 5.0kb downstream 5000 false Chr11: 6794908-6799907 Phaseolus vulgaris
Phvul.011G073500 10.0kb upstream 10.0kb upstream 17207 true Chr11: 6777701-6794907 Phaseolus vulgaris
Phvul.011G073500 10.0kb upstream 10.0kb upstream 10000 false Chr11: 6777701-6787700 Phaseolus vulgaris
Phvul.011G073500 10.0kb downstream 10.0kb downstream 17207 true Chr11: 6787701-6804907 Phaseolus vulgaris
Phvul.011G073500 10.0kb downstream 10.0kb downstream 10000 false Chr11: 6794908-6804907 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300577 5265 Fabidae View MSA
124064222 5270 Rosid View MSA
123745101 5271 Pentapetalae View MSA
122788646 5272 Eudicot View MSA
122042062 5273 Angiosperm View MSA
121346887 5274 Embryophyte View MSA
123427095 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 72.4764 0.0 198.045 High High
cufflinks 35.9753 0.0 93.6417 High  
cufflinks 4.94646 0.0 14.0854   Low
cufflinks 55.9115 0.0 148.29 High High
cufflinks 20.2167 0.0 52.3978    
cufflinks 5.14684 0.0 14.6199   Low
cufflinks 6.66693 0.0 18.4915    
cufflinks 7.14622 0.0 19.6452    
cufflinks 20.1843 0.0 52.2798    
cufflinks 53.1541 0.0 141.191 High High
cufflinks 8.4272 0.0 22.9901    

0 Strain