Gene : Phvul.L005443 P. vulgaris v2.1
Defline:  (1 of 197) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  39
Name:  ? Phvul.L005443 Secondary Identifier:  ? PAC:37178978
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.L005443 0.5kb upstream 0.5kb upstream 2571 true scaffold_15: 326852-329422 Phaseolus vulgaris
Phvul.L005443 0.5kb upstream 0.5kb upstream 500 false scaffold_15: 326852-327351 Phaseolus vulgaris
Phvul.L005443 0.5kb downstream 0.5kb downstream 2571 true scaffold_15: 327352-329922 Phaseolus vulgaris
Phvul.L005443 0.5kb downstream 0.5kb downstream 500 false scaffold_15: 329423-329922 Phaseolus vulgaris
Phvul.L005443 1.0kb upstream 1.0kb upstream 3071 true scaffold_15: 326352-329422 Phaseolus vulgaris
Phvul.L005443 1.0kb upstream 1.0kb upstream 1000 false scaffold_15: 326352-327351 Phaseolus vulgaris
Phvul.L005443 1.0kb downstream 1.0kb downstream 3071 true scaffold_15: 327352-330422 Phaseolus vulgaris
Phvul.L005443 1.0kb downstream 1.0kb downstream 1000 false scaffold_15: 329423-330422 Phaseolus vulgaris
Phvul.L005443 2.0kb upstream 2.0kb upstream 4071 true scaffold_15: 325352-329422 Phaseolus vulgaris
Phvul.L005443 2.0kb upstream 2.0kb upstream 2000 false scaffold_15: 325352-327351 Phaseolus vulgaris
Phvul.L005443 2.0kb downstream 2.0kb downstream 4071 true scaffold_15: 327352-331422 Phaseolus vulgaris
Phvul.L005443 2.0kb downstream 2.0kb downstream 2000 false scaffold_15: 329423-331422 Phaseolus vulgaris
Phvul.L005443 5.0kb upstream 5.0kb upstream 7071 true scaffold_15: 322352-329422 Phaseolus vulgaris
Phvul.L005443 5.0kb upstream 5.0kb upstream 5000 false scaffold_15: 322352-327351 Phaseolus vulgaris
Phvul.L005443 5.0kb downstream 5.0kb downstream 7071 true scaffold_15: 327352-334422 Phaseolus vulgaris
Phvul.L005443 5.0kb downstream 5.0kb downstream 5000 false scaffold_15: 329423-334422 Phaseolus vulgaris
Phvul.L005443 10.0kb upstream 10.0kb upstream 12071 true scaffold_15: 317352-329422 Phaseolus vulgaris
Phvul.L005443 10.0kb upstream 10.0kb upstream 10000 false scaffold_15: 317352-327351 Phaseolus vulgaris
Phvul.L005443 10.0kb downstream 10.0kb downstream 12071 true scaffold_15: 327352-339422 Phaseolus vulgaris
Phvul.L005443 10.0kb downstream 10.0kb downstream 10000 false scaffold_15: 329423-339422 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305758 5265 Fabidae View MSA
124062524 5270 Rosid View MSA
123736942 5271 Pentapetalae View MSA
122790560 5272 Eudicot View MSA
122046804 5273 Angiosperm View MSA
121351065 5274 Embryophyte View MSA
123381996 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.744387 0.0 2.64576    
cufflinks 0.663744 0.0 2.3868    
cufflinks 0.322254 0.0 1.22896 Low Low
cufflinks 0.652409 0.0 2.36856    
cufflinks 0.770053 0.0 2.74441    
cufflinks 0.912868 0.0 3.17894    
cufflinks 1.11392 0.0 3.79614    
cufflinks 1.49282 0.0 4.89562   High
cufflinks 0.547322 0.0 2.00816    
cufflinks 0.776958 0.0 2.75511    
cufflinks 0.917115 0.0 3.20817    

0 Strain